BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0600500 Os04g0600500|AK105483
(213 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31880.1 | chr1:11447804-11450053 FORWARD LENGTH=345 125 2e-29
AT2G35600.1 | chr2:14941092-14943281 REVERSE LENGTH=332 112 1e-25
AT5G20540.1 | chr5:6947943-6951760 FORWARD LENGTH=385 92 3e-19
AT1G54180.1 | chr1:20227697-20229728 FORWARD LENGTH=371 83 1e-16
AT3G14000.1 | chr3:4631170-4633353 REVERSE LENGTH=375 79 1e-15
AT5G19420.2 | chr5:6547945-6552981 REVERSE LENGTH=1140 72 2e-13
AT5G12350.1 | chr5:3995789-4000545 FORWARD LENGTH=1076 71 3e-13
AT1G69710.1 | chr1:26222325-26226530 FORWARD LENGTH=1042 62 2e-10
AT1G65920.1 | chr1:24525267-24529204 REVERSE LENGTH=1007 62 3e-10
AT3G23270.1 | chr3:8316436-8320337 FORWARD LENGTH=1046 52 2e-07
AT2G21030.1 | chr2:9024904-9025578 REVERSE LENGTH=159 51 4e-07
AT1G76950.1 | chr1:28906952-28911325 FORWARD LENGTH=1104 50 9e-07
AT5G42140.1 | chr5:16837547-16841640 REVERSE LENGTH=1074 50 1e-06
>AT1G31880.1 | chr1:11447804-11450053 FORWARD LENGTH=345
Length = 344
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 109/220 (49%), Gaps = 35/220 (15%)
Query: 1 MLACIACSSKEGGED---GSRGAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATA 57
M +CIAC+ +GGE+ G+RG TP+ ++AVKSLT Q+KDM LKFSG+ YK
Sbjct: 1 MFSCIACTKADGGEEVEHGARGGTTPNTKEAVKSLTIQIKDMALKFSGA-----YKQCKP 55
Query: 58 XXXXXXXXXXXXXXXXXIDDSAFMTTTRP--GGEAYMYTXXXXXXXXXXXSTSMATWDMT 115
D+A P GG A S WD T
Sbjct: 56 CTGSSSSPLKKGHRSFPDYDNASEGVPYPFMGGSA----------------GSTPAWDFT 99
Query: 116 RSKSNRGWQQDAGRSPGGTTWIQSIEEE---AGADDVTVVEDAVPREWTAQVEPGVQITF 172
S AGR T I + E A + DV V++D P+EW AQVEPGV ITF
Sbjct: 100 NSS-----HHPAGRLESKFTSIYGNDRESISAQSCDV-VLDDDGPKEWMAQVEPGVHITF 153
Query: 173 VTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
+LP GGNDLKRIRFSRE F + +A+ WW N D+I Y
Sbjct: 154 ASLPTGGNDLKRIRFSREMFDKWQAQRWWGENYDKIVELY 193
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 39/55 (70%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL 213
EW + EPGV IT L G +L+R+RFSRERFGE AK WWE NR+RIQ QYL
Sbjct: 290 EWIEEDEPGVYITIRQLSDGTRELRRVRFSRERFGEVHAKTWWEQNRERIQTQYL 344
>AT2G35600.1 | chr2:14941092-14943281 REVERSE LENGTH=332
Length = 331
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 112/220 (50%), Gaps = 37/220 (16%)
Query: 1 MLACIACS-----SKEGGEDGSRGAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAA 55
M CI C+ +E ED +RG+ TP+ ++AVKSLT+Q+KDM KFSGS+K
Sbjct: 1 MFTCINCTKMADRGEEDEEDEARGSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKPTPG 60
Query: 56 TAXXXXXXXXXXXXXXXXXIDDSAFMTTTRPGGEAYMYTXXXXXXXXXXXSTSMATWDMT 115
++ S + PGG ++S WD+
Sbjct: 61 SSSSNLRKFPDFDTA-------SESVPYPYPGG----------------STSSTPAWDLP 97
Query: 116 RSKSNRGWQQDAGRSPGGTTWIQSIEEE---AGADDVTVVEDAVPREWTAQVEPGVQITF 172
RS ++ +GR T + E E A + DV V+ED P+EW AQVEPGV ITF
Sbjct: 98 RSSYHQ-----SGRPDSRFTSMYGGERESISAQSCDV-VLEDDEPKEWMAQVEPGVHITF 151
Query: 173 VTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
V+LP GGNDLKRIRFSRE F + +A+ WW N DRI Y
Sbjct: 152 VSLPSGGNDLKRIRFSREVFDKWQAQRWWGENYDRIVELY 191
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 40/55 (72%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL 213
EW + EPGV IT LP G +L+R+RFSRERFGE AK WWE NRDRIQ QYL
Sbjct: 277 EWVEEDEPGVYITIRQLPDGTRELRRVRFSRERFGEVHAKTWWEQNRDRIQTQYL 331
>AT5G20540.1 | chr5:6947943-6951760 FORWARD LENGTH=385
Length = 384
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 49/67 (73%)
Query: 146 ADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNR 205
D + VE+ P+EW AQVEPGV ITFV+LPGGGNDLKRIRFSR+ F + +A+ WW N
Sbjct: 138 VDPIVFVEEKEPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFSRDMFNKLQAQRWWADNY 197
Query: 206 DRIQAQY 212
D++ Y
Sbjct: 198 DKVMELY 204
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 41/58 (70%)
Query: 156 VPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL 213
V EW Q EPGV IT LPGG +L+R+RFSRERFGE A++WWE NR RI QYL
Sbjct: 327 VDNEWVEQDEPGVYITIKVLPGGKRELRRVRFSRERFGEMHARLWWEENRARIHEQYL 384
>AT1G54180.1 | chr1:20227697-20229728 FORWARD LENGTH=371
Length = 370
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 88/201 (43%), Gaps = 36/201 (17%)
Query: 1 MLACIACS----SKEGG----EDGSRGA-ATPHGRDAVKSLTSQLKDMVLKFSGSNKHQH 51
ML CIAC+ + GG ED G TP + A+KSLTSQLKDM +K SG+ K+
Sbjct: 1 MLTCIACTKQLNTNNGGSTREEDEEHGVIGTPRTKQAIKSLTSQLKDMAVKASGAYKNCK 60
Query: 52 YKAATAXXXXXXXXXXXXXXXXXIDDSAFMTTTRPGGEAYMYTXXXXXXXXXXXSTSMAT 111
+ T D F + + G A +++
Sbjct: 61 PCSGTTNRNQNRNYADSDAAS---DSGRFHYSYQRAGTA---------------TSTPKI 102
Query: 112 WDMTRSKSNRGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQIT 171
W +G + G +P + + + +ED +EW AQVEPGV IT
Sbjct: 103 WGNEMESRLKGISSEEG-TPTSMS--------GRTESIVFMEDDEVKEWVAQVEPGVLIT 153
Query: 172 FVTLPGGGNDLKRIRFSRERF 192
FV+LP GGNDLKRIRF RF
Sbjct: 154 FVSLPQGGNDLKRIRFRSTRF 174
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 40/55 (72%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQYL 213
EW Q EPG+ IT LP G +L+R+RFSR++FGE A++WWE NR RIQ QYL
Sbjct: 316 EWVEQDEPGIYITIRALPDGNRELRRVRFSRDKFGETHARLWWEQNRARIQQQYL 370
>AT3G14000.1 | chr3:4631170-4633353 REVERSE LENGTH=375
Length = 374
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 149 VTVVEDAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRI 208
V + E+ +EW AQVEPGV ITFV+LP GGND+KRIRFSRE F + +A+ WW N D++
Sbjct: 134 VFMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKV 193
Query: 209 QAQY 212
Y
Sbjct: 194 MELY 197
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 141 EEEA--GADDVTVVEDA-VPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRA 197
EEEA ++++V + + EW Q E GV IT LP G +L+R+RFSRE+FGE A
Sbjct: 299 EEEADHSGEELSVSNASDIETEWVEQDEAGVYITIRALPDGTRELRRVRFSREKFGETNA 358
Query: 198 KVWWEHNRDRIQAQYL 213
++WWE NR RIQ QYL
Sbjct: 359 RLWWEQNRARIQQQYL 374
>AT5G19420.2 | chr5:6547945-6552981 REVERSE LENGTH=1140
Length = 1139
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 36/54 (66%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
EW Q EPGV IT L GG DLKR+RFSR+RF E +A+ WW NR R+ QY
Sbjct: 1066 EWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQY 1119
>AT5G12350.1 | chr5:3995789-4000545 FORWARD LENGTH=1076
Length = 1075
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 37/55 (67%)
Query: 158 REWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
+EW Q EPGV IT L GG DLKR+RFSR+RF E +A+ WW NR R+ QY
Sbjct: 1007 KEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWADNRGRVYEQY 1061
>AT1G69710.1 | chr1:26222325-26226530 FORWARD LENGTH=1042
Length = 1041
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRI 208
E Q EPGV +T ++LPGGG +LKR+RFSR++F E++A+ WW N ++
Sbjct: 983 EKVVQDEPGVYLTLLSLPGGGTELKRVRFSRKQFTEEQAEKWWGENGAKV 1032
>AT1G65920.1 | chr1:24525267-24529204 REVERSE LENGTH=1007
Length = 1006
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 33/54 (61%)
Query: 159 EWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
E Q EPGV ITF LP G LKR+RFSR+RF E A+ WWE + + +Y
Sbjct: 949 EQVEQYEPGVYITFTALPCGQKTLKRVRFSRKRFSEKEAQRWWEEKQVLVYNKY 1002
>AT3G23270.1 | chr3:8316436-8320337 FORWARD LENGTH=1046
Length = 1045
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 158 REWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
+E Q EPGV +T+ G +R+RFS++RF E +A+ WW N+DR+ Y
Sbjct: 948 KESKEQFEPGVYVTYEVDMNGNKIFRRVRFSKKRFDEHQAEDWWTKNKDRLLKCY 1002
>AT2G21030.1 | chr2:9024904-9025578 REVERSE LENGTH=159
Length = 158
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 169 QITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
ITF +LP GGNDLKRIRFSRE + + +A+ W N D+I Y
Sbjct: 13 HITFASLPTGGNDLKRIRFSREMYNKWQAQRRWGENYDKIVELY 56
>AT1G76950.1 | chr1:28906952-28911325 FORWARD LENGTH=1104
Length = 1103
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 154 DAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
+ V EW Q EPGV IT V L G DL+R+RFSR RFGE +A+ WW NR+++ +Y
Sbjct: 1019 NQVEAEWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKY 1077
>AT5G42140.1 | chr5:16837547-16841640 REVERSE LENGTH=1074
Length = 1073
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 37/57 (64%)
Query: 156 VPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
V EW Q EPGV IT + L G DLKR+RFSR RF E +A+ WW NR+R+ +Y
Sbjct: 997 VEAEWIEQYEPGVYITLLALGDGTRDLKRVRFSRRRFREQQAETWWSENRERVYEKY 1053
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.128 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,242,869
Number of extensions: 149977
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 20
Length of query: 213
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 119
Effective length of database: 8,529,465
Effective search space: 1015006335
Effective search space used: 1015006335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)