Os02g0700700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance/zinc finger/chromosome condensation-like region domain containing protein.
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Os02g0700700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance/zinc finger/chromosome condensation-like region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.06 | 0.453 | 9.62 | -1.24 | 1.17 | 1.41 | 0.269 | -1.87 | -0.488 | 9.53 | 23.09 | 1293 | -- | -- |
| 94.58 | 0.453 | 9.56 | -0.716 | 1.2 | 1.28 | 0.377 | -- | -0.358 | 9.56 | 22.4 | 1233 | -- | -- |
| 93.22 | 0.45 | 9.62 | -1.25 | 1.19 | 1.43 | -- | -1.91 | -0.501 | 9.56 | 23 | 1265 | -- | -- |
| 95.07 | 0.454 | 9.56 | -0.7 | 1.19 | 1.27 | -- | -- | -0.359 | 9.56 | 22.4 | 1246 | -- | -- |
| 167.37 | 0.603 | 9.65 | -1.23 | -- | 1.3 | -- | -1.69 | -0.476 | -- | 22.9 | 1443 | -- | -- |
| 148.48 | 0.571 | 9.5 | -0.289 | 1.1 | -- | 0.323 | -- | -0.0914 | 8.91 | -- | -- | -- | -- |
| 148.84 | 0.571 | 9.5 | -0.278 | 1.1 | -- | -- | -- | -0.091 | 8.94 | -- | -- | -- | -- |
| 168.56 | 0.605 | 9.59 | -0.699 | -- | 1.15 | -- | -- | -0.349 | -- | 22.22 | 1458 | -- | -- |
| 106.93 | 0.482 | 9.53 | -- | 1.21 | 1.12 | -- | -- | -0.245 | 9.55 | 22.51 | 1199 | -- | -- |
| 218.11 | 0.69 | 9.53 | -0.278 | -- | -- | -- | -- | -0.0836 | -- | -- | -- | -- | -- |
| 150.87 | 0.575 | 9.49 | -- | 1.1 | -- | -- | -- | -0.0601 | 8.95 | -- | -- | -- | -- |
| 180.33 | 0.625 | 9.56 | -- | -- | 0.988 | -- | -- | -0.24 | -- | 22.4 | 1451 | -- | -- |
| 220.15 | 0.693 | 9.52 | -- | -- | -- | -- | -- | -0.0528 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 114 | 94.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 135 | 94.32 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 323 | 96.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 325 | 96.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 381 | 96.40 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 468 | 96.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 490 | 96.82 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 502 | 96.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 620 | 97.67 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 698 | 97.96 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 739 | 98.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 752 | 98.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 791 | 98.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 834 | 98.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 863 | 98.80 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 882 | 98.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 909 | 98.97 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |