BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0700700 Os02g0700700|AK101598
(411 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0700700 Disease resistance/zinc finger/chromosome cond... 640 0.0
Os04g0600500 Disease resistance/zinc finger/chromosome cond... 164 1e-40
Os03g0853500 Disease resistance/zinc finger/chromosome cond... 140 2e-33
Os08g0462700 Disease resistance/zinc finger/chromosome cond... 119 4e-27
Os05g0384800 Similar to Chromosome condensation regulator p... 73 4e-13
Os01g0952300 Pleckstrin homology-type domain containing pro... 72 6e-13
Os12g0193000 70 3e-12
Os04g0475200 69 9e-12
>Os02g0700700 Disease resistance/zinc finger/chromosome condensation-like region
domain containing protein
Length = 411
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/411 (78%), Positives = 324/411 (78%)
Query: 1 MLACIACSTKDGGEGGHRSATATPNSGKSLTSQLKDMVLKFSGSGRHQYKSGGSPSLRTS 60
MLACIACSTKDGGEGGHRSATATPNSGKSLTSQLKDMVLKFSGSGRHQYKSGGSPSLRTS
Sbjct: 1 MLACIACSTKDGGEGGHRSATATPNSGKSLTSQLKDMVLKFSGSGRHQYKSGGSPSLRTS 60
Query: 61 RFHRSSRLAAYPGIIDESGFTSDGAGEAYTYMXXXXXXXXXXXXXXXWDLPPKVNHRSFQ 120
RFHRSSRLAAYPGIIDESGFTSDGAGEAYTYM WDLPPKVNHRSFQ
Sbjct: 61 RFHRSSRLAAYPGIIDESGFTSDGAGEAYTYMRTTTASAGARAAPSTWDLPPKVNHRSFQ 120
Query: 121 PRVIRSPSASGVPSIGXXXXXXXXXXXXXXXXXXXXXRVPREWTAQVEPGVQITFVSIPG 180
PRVIRSPSASGVPSIG RVPREWTAQVEPGVQITFVSIPG
Sbjct: 121 PRVIRSPSASGVPSIGEEDYDDDDDDDDEETVLLEEDRVPREWTAQVEPGVQITFVSIPG 180
Query: 181 GAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNVQTFSRQQGFSTPTSSVDEAMQR 240
GAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNVQTFSRQQGFSTPTSSVDEAMQR
Sbjct: 181 GAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNVQTFSRQQGFSTPTSSVDEAMQR 240
Query: 241 DSFYSRVGSTREXXXXXXXXXXXXXXXGAGREHPIXXXXXXXXXXXXXXXXXXXRPPFYP 300
DSFYSRVGSTRE GAGREHPI RPPFYP
Sbjct: 241 DSFYSRVGSTRESPAMMMPPPPPLPSSGAGREHPISRTASSKAQLSSSSSVAAARPPFYP 300
Query: 301 STAVPDPSDHVWAHHFNLLNSAAAGPAAPYDPSRGTTSSRDEASVSISNASDLEATEWVE 360
STAVPDPSDHVWAHHFNLLNSAAAGPAAPYDPSRGTTSSRDEASVSISNASDLEATEWVE
Sbjct: 301 STAVPDPSDHVWAHHFNLLNSAAAGPAAPYDPSRGTTSSRDEASVSISNASDLEATEWVE 360
Query: 361 QDEPGVSITIREFGDGTXXXXXXXXXXXXXXXXXAKVWWEQNRDRIHAQYL 411
QDEPGVSITIREFGDGT AKVWWEQNRDRIHAQYL
Sbjct: 361 QDEPGVSITIREFGDGTRELRRVRFSRERFGEERAKVWWEQNRDRIHAQYL 411
>Os04g0600500 Disease resistance/zinc finger/chromosome condensation-like region
domain containing protein
Length = 213
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 126/226 (55%), Gaps = 24/226 (10%)
Query: 1 MLACIACSTKDGGEGGHRSATATP---NSGKSLTSQLKDMVLKFSGSGRHQ-YK--SGGS 54
MLACIACS+K+GGE G R A ATP ++ KSLTSQLKDMVLKFSGS +HQ YK + GS
Sbjct: 1 MLACIACSSKEGGEDGSRGA-ATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAGS 59
Query: 55 PSLRTSRFHRSSRLAAYPGIIDESGF--TSDGAGEAYTYMXXXXXXXXX--XXXXXXWDL 110
PS R+ + R YPG ID+S F T+ GEAY Y WD+
Sbjct: 60 PSFRSRSYRR-----PYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATWDM 114
Query: 111 PPKVNHRSFQPRVIRSPSASGVPSIGXXXXXXXXXXXXXXXXXXXXXRVPREWTAQVEPG 170
++R +Q RSP G VPREWTAQVEPG
Sbjct: 115 TRSKSNRGWQQDAGRSPG-------GTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPG 167
Query: 171 VQITFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELY 216
VQITFV++PGG GNDLKRIRFSRE F + A+ WW N DR+ Y
Sbjct: 168 VQITFVTLPGG-GNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
>Os03g0853500 Disease resistance/zinc finger/chromosome condensation-like region
domain containing protein
Length = 329
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 115/223 (51%), Gaps = 56/223 (25%)
Query: 33 QLKDMVLKFSGSGRH--QYKSGGSPSLR--TSRFHRSSRLAAYPGIIDESGFTSDGAGEA 88
QLKDMV+K SG+ RH Q + GGSP R T+ +RS PG++ + D A
Sbjct: 3 QLKDMVMKLSGTSRHHGQQRRGGSPPPRGRTTSVYRSGYYR--PGMVQD-----DMAVPP 55
Query: 89 YTYMXXXXXXXXXXXXXXXWDLPPKVNHRSFQPRVIRSPSASGVPSIGXXXXXXXXXXXX 148
TY+ WD P+ G
Sbjct: 56 ATYLGGGGTSMSSASSTPAWDF--------------------ARPAEGEA---------- 85
Query: 149 XXXXXXXXXRVPREWTAQVEPGVQITFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGEN 208
REW AQVEPGVQITFVS+ GG GNDLKRIRFSREM++KW+AQ+WWGEN
Sbjct: 86 ------------REWVAQVEPGVQITFVSLAGGGGNDLKRIRFSREMYDKWQAQKWWGEN 133
Query: 209 YDRVVELYNVQTFSRQQGFSTPTSSVDEAMQRDSFYSRVGSTR 251
+R++ELYNV+ FSRQ PT + +R+SFYS+VGSTR
Sbjct: 134 NERIMELYNVRRFSRQ---VLPTPPRSDDGERESFYSQVGSTR 173
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 336 TTSSRDEASVSISNASDLEATEWVEQDEPGVSITIREFGDGTXXXXXXXXXXXXXXXXXA 395
+ SSRDE VSISNAS+LE TEWV QDEPGV IT+RE DGT A
Sbjct: 256 SCSSRDE--VSISNASELEVTEWVIQDEPGVYITVRELADGTRELRRVRFSRERFAELNA 313
Query: 396 KVWWEQNRDRIHAQYL 411
K+WWE+N++RI AQYL
Sbjct: 314 KLWWEENKERIQAQYL 329
>Os08g0462700 Disease resistance/zinc finger/chromosome condensation-like region
domain containing protein
Length = 397
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 66/81 (81%), Gaps = 1/81 (1%)
Query: 161 REWTAQVEPGVQITFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNVQT 220
+EW AQVEPGV ITF+S+P G GNDLKRIRFSRE+FNKW+AQRWW ENY++V+ELYNVQ
Sbjct: 150 KEWVAQVEPGVLITFLSLPEG-GNDLKRIRFSREIFNKWQAQRWWAENYEKVMELYNVQR 208
Query: 221 FSRQQGFSTPTSSVDEAMQRD 241
F++Q T S DE+++ D
Sbjct: 209 FNQQTPLPTTPKSEDESLKED 229
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 342 EASVSISNASDLEATEWVEQDEPGVSITIREFGDGTXXXXXXXXXXXXXXXXXAKVWWEQ 401
E SVS+SNASD E EWVE+DEPGV ITIR G A++WWE+
Sbjct: 329 ELSVSVSNASDQE-REWVEEDEPGVYITIRALPGGIRELRRVRFSREKFSEMHARLWWEE 387
Query: 402 NRDRIHAQYL 411
NR RIH QYL
Sbjct: 388 NRARIHDQYL 397
>Os05g0384800 Similar to Chromosome condensation regulator protein (Fragment)
Length = 1086
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 162 EWTAQVEPGVQITFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNVQTF 221
EW Q EPGV IT ++PGG DLKR+RFSR+ F++ +A++WW EN RV E YNV+
Sbjct: 1015 EWVEQDEPGVYITLTALPGGT-RDLKRVRFSRKRFSETQAEQWWQENRARVYEQYNVRVV 1073
Query: 222 SRQQG 226
+ G
Sbjct: 1074 DKSVG 1078
>Os01g0952300 Pleckstrin homology-type domain containing protein
Length = 1133
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 162 EWTAQVEPGVQITFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNVQTF 221
EW Q EPGV IT ++PGGA DLKR+RFSR+ F++ +A++WW EN RV + YNV+
Sbjct: 1021 EWVEQDEPGVYITLTALPGGA-RDLKRVRFSRKRFSETQAEQWWQENRTRVYQHYNVRMV 1079
Query: 222 SRQQGFSTPTSSVD 235
++ S P +D
Sbjct: 1080 --EKSASMPVQYLD 1091
>Os12g0193000
Length = 323
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 161 REWTAQVEPGVQITFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNV 218
REW A+ EPGV +T G N L+RIRF E+F+ W AQ WW +N+DR+ ELY +
Sbjct: 109 REWVAEPEPGVLLTLAPRADGVSNRLRRIRFREEVFDAWAAQCWWADNHDRIAELYCL 166
>Os04g0475200
Length = 1112
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 162 EWTAQVEPGVQITFVSIPGGAGNDLKRIRFSREMFN-KWEAQRWWGENYDRVVELYNV 218
EW A+ EPGV +T V+ P G N L+RIRFS E+F+ AQRWW +NYD +VELY+V
Sbjct: 963 EWVAEPEPGVLMTLVARPDGT-NHLRRIRFSEELFDGARAAQRWWADNYDAIVELYSV 1019
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,600,545
Number of extensions: 536093
Number of successful extensions: 1307
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1291
Number of HSP's successfully gapped: 10
Length of query: 411
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 308
Effective length of database: 11,657,759
Effective search space: 3590589772
Effective search space used: 3590589772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)