Os05g0384800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chromosome condensation regulator protein (Fragment).
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Os05g0384800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chromosome condensation regulator protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.4 | 0.302 | 9.54 | 0.304 | 1.09 | 0.69 | 0.359 | -1.04 | -0.211 | 8.64 | 24.91 | 248 | -- | -- |
| 42.05 | 0.302 | 9.57 | 0.124 | 1.12 | 0.969 | 0.237 | -- | -0.306 | 8.55 | 22.07 | 274 | -- | -- |
| 41.61 | 0.3 | 9.54 | 0.292 | 1.1 | 0.678 | -- | -0.987 | -0.222 | 8.66 | 25 | 183 | -- | -- |
| 42.17 | 0.302 | 9.56 | 0.179 | 1.1 | 1.07 | -- | -- | -0.286 | 8.58 | 21.77 | 257 | -- | -- |
| 89.9 | 0.442 | 9.53 | 0.596 | -- | 1.42 | -- | -1.75 | -0.098 | -- | 45.7 | 609 | -- | -- |
| 51.94 | 0.338 | 9.59 | -0.0555 | 1.12 | -- | 0.325 | -- | -0.397 | 8.33 | -- | -- | -- | -- |
| 52.27 | 0.339 | 9.59 | -0.046 | 1.12 | -- | -- | -- | -0.397 | 8.31 | -- | -- | -- | -- |
| 92.03 | 0.447 | 9.57 | 0.289 | -- | 1.37 | -- | -- | -0.154 | -- | 31.75 | 619 | -- | -- |
| 42.94 | 0.305 | 9.57 | -- | 1.09 | 1 | -- | -- | -0.3 | 8.52 | 21.81 | 258 | -- | -- |
| 122.01 | 0.516 | 9.62 | -0.0388 | -- | -- | -- | -- | -0.385 | -- | -- | -- | -- | -- |
| 52.33 | 0.338 | 9.59 | -- | 1.12 | -- | -- | -- | -0.392 | 8.31 | -- | -- | -- | -- |
| 94.18 | 0.452 | 9.58 | -- | -- | 1.26 | -- | -- | -0.21 | -- | 32.52 | 615 | -- | -- |
| 122.05 | 0.516 | 9.62 | -- | -- | -- | -- | -- | -0.381 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.54 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 3 | 37.80 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 5 | 37.81 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 7 | 37.85 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 21 |
| 13 | 37.93 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 17 |
| 24 | 38.49 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 27 | 38.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 28 | 38.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 34 | 38.68 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 35 | 38.68 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 38 | 38.74 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 39 | 38.75 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 40 | 38.76 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 49 | 38.87 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 56 | 39.02 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 64 | 39.09 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 70 | 39.12 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 77 | 39.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 78 | 39.18 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 79 | 39.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 84 | 39.21 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 94 | 39.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 95 | 39.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 120 | 39.54 | temperature | 25.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 146 | 39.69 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 147 | 39.71 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 150 | 39.72 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 152 | 39.72 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 173 | 39.81 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 175 | 39.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 202 | 39.96 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 203 | 39.96 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 209 | 39.99 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 212 | 40.00 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 219 | 40.02 | wind | 7.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 220 | 40.02 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 221 | 40.02 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 228 | 40.03 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 229 | 40.03 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 6 |
| 234 | 40.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 237 | 40.04 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 239 | 40.04 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 241 | 40.05 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 250 | 40.06 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 253 | 40.06 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 259 | 40.07 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 262 | 40.07 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 6 | 6 |
| 269 | 40.07 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 2 | 9 |
| 279 | 40.08 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 328 | 40.11 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 345 | 40.12 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 361 | 40.13 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 370 | 40.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 381 | 40.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 387 | 40.15 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 412 | 40.17 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 446 | 40.18 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 1 | NA |
| 460 | 40.18 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 21 | 15 |
| 462 | 40.18 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 23 | 15 |
| 465 | 40.19 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 554 | 40.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 560 | 40.23 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 24 | 12 |
| 569 | 40.24 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 648 | 40.27 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 713 | 40.30 | humidity | 80.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 734 | 40.30 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 737 | 40.31 | humidity | 90.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 761 | 40.32 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 779 | 40.33 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 874 | 40.36 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 876 | 40.36 | humidity | 50.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 928 | 40.38 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 8 |