Os04g0686200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chromosome condensation regulator protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0686200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Chromosome condensation regulator protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.5 | 0.66 | 6.31 | -0.884 | 1.15 | -0.988 | -0.571 | 3.6 | 0.152 | 4.61 | 30.24 | 1304 | -- | -- |
| 199.01 | 0.657 | 6.27 | -0.241 | 1.28 | -0.782 | -0.616 | -- | -0.0664 | 4.88 | 28.65 | 2139 | -- | -- |
| 198.03 | 0.655 | 6.31 | -0.872 | 1.15 | -0.988 | -- | 3.67 | 0.18 | 4.59 | 30.4 | 1327 | -- | -- |
| 199.39 | 0.658 | 6.27 | -0.227 | 1.29 | -0.759 | -- | -- | -0.0407 | 4.8 | 28.68 | 2132 | -- | -- |
| 266.93 | 0.761 | 6.31 | -0.803 | -- | -1.09 | -- | 3.29 | 0.226 | -- | 30.54 | 1282 | -- | -- |
| 216.39 | 0.69 | 6.26 | -0.0139 | 1.2 | -- | -0.452 | -- | 0.0515 | 4.4 | -- | -- | -- | -- |
| 216.95 | 0.69 | 6.26 | -0.0102 | 1.2 | -- | -- | -- | 0.054 | 4.39 | -- | -- | -- | -- |
| 267.29 | 0.761 | 6.23 | -0.16 | -- | -0.723 | -- | -- | 0.24 | -- | 31.1 | 1203 | -- | -- |
| 200.63 | 0.66 | 6.27 | -- | 1.27 | -0.708 | -- | -- | -0.00826 | 4.77 | 28.8 | 2132 | -- | -- |
| 294.42 | 0.802 | 6.26 | 0.0371 | -- | -- | -- | -- | 0.0858 | -- | -- | -- | -- | -- |
| 216.95 | 0.689 | 6.26 | -- | 1.2 | -- | -- | -- | 0.0551 | 4.39 | -- | -- | -- | -- |
| 267.97 | 0.762 | 6.23 | -- | -- | -0.702 | -- | -- | 0.244 | -- | 31.13 | 1197 | -- | -- |
| 294.46 | 0.801 | 6.27 | -- | -- | -- | -- | -- | 0.0816 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.57 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 16 | 192.75 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 31 | 192.85 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 34 | 193.83 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 36 | 194.49 | radiation | 20 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 54 | 194.87 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 65 | 195.13 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 70 | 195.37 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 99 | 195.59 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 11 |
| 104 | 196.08 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 105 | 196.21 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 107 | 196.25 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 109 | 196.41 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 122 | 196.52 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 139 | 196.63 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 150 | 196.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 152 | 196.68 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 153 | 196.69 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 159 | 196.71 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 10 |
| 170 | 196.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 176 | 197.03 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 188 | 197.08 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 203 | 197.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 205 | 197.14 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 207 | 197.15 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 209 | 197.16 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 217 | 197.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 219 | 197.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 225 | 197.25 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 246 | 197.38 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 250 | 197.39 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 257 | 197.41 | temperature | 30 | 1440 | > th | dose independent | sin | 11 | NA |
| 266 | 197.45 | temperature | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 270 | 197.47 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 14 |
| 284 | 197.53 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 321 | 197.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 331 | 197.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 332 | 197.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 334 | 197.68 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 336 | 197.70 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 337 | 197.70 | radiation | 40 | 14400 | < th | dose dependent | rect. | 17 | 12 |
| 344 | 197.72 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 345 | 197.73 | radiation | 30 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 347 | 197.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 19 |
| 353 | 197.74 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 22 |
| 362 | 197.75 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 21 |
| 366 | 197.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 386 | 197.80 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 402 | 197.80 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 439 | 197.84 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 10 |
| 456 | 197.85 | temperature | 30 | 1440 | > th | dose dependent | sin | 18 | NA |
| 460 | 197.85 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 461 | 197.85 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 594 | 197.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 647 | 197.90 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 679 | 197.95 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 700 | 197.97 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 812 | 198.09 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 851 | 198.13 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 883 | 198.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 935 | 198.25 | radiation | 10 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 959 | 198.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 962 | 198.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 11 |