BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0579700 Os04g0579700|AK065545
(533 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0579700 Similar to Predicted protein 927 0.0
Os07g0123500 Thioredoxin-related domain containing protein 333 2e-91
Os03g0769400 Conserved hypothetical protein 328 6e-90
Os04g0278000 Similar to PRLI-interacting factor G (Fragment) 236 3e-62
Os07g0259700 Similar to PRLI-interacting factor G (Fragment) 229 4e-60
Os12g0596600 Hypothetical protein 223 3e-58
Os12g0188500 Conserved hypothetical protein 193 2e-49
Os07g0668800 Conserved hypothetical protein 82 7e-16
>Os04g0579700 Similar to Predicted protein
Length = 533
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/517 (88%), Positives = 460/517 (88%)
Query: 17 KFNSALNAGXXXXXXXXXXXXDKTRSSPTLFDMMANEQDYHPRTAAAIHSIXXXXXXXXX 76
KFNSALNAG DKTRSSPTLFDMMANEQDYHPRTAAAIHSI
Sbjct: 17 KFNSALNAGLLNPMSPPPLPLDKTRSSPTLFDMMANEQDYHPRTAAAIHSIPAPPQQAHP 76
Query: 77 XXXXRSMDRQVLLQDRVAELIGSCSPGNQFNDADSSDVRLTLTSKDGLSVTLCVHRHILV 136
RSMDRQVLLQDRVAELIGSCSPGNQFNDADSSDVRLTLTSKDGLSVTLCVHRHILV
Sbjct: 77 LQPARSMDRQVLLQDRVAELIGSCSPGNQFNDADSSDVRLTLTSKDGLSVTLCVHRHILV 136
Query: 137 AHSRFFAAKLSDRWSKQQRTLPHIVEISDCDDVEVYVETLRLMYCKDLRRRLMREDVSKV 196
AHSRFFAAKLSDRWSKQQRTLPHIVEISDCDDVEVYVETLRLMYCKDLRRRLMREDVSKV
Sbjct: 137 AHSRFFAAKLSDRWSKQQRTLPHIVEISDCDDVEVYVETLRLMYCKDLRRRLMREDVSKV 196
Query: 197 LGILKVSAAIVFDAGVLSCLEYLEAAPWAEDDDEKVAALLTQLHLENSGAGEVLKRVSLE 256
LGILKVSAAIVFDAGVLSCLEYLEAAPWAEDDDEKVAALLTQLHLENSGAGEVLKRVSLE
Sbjct: 197 LGILKVSAAIVFDAGVLSCLEYLEAAPWAEDDDEKVAALLTQLHLENSGAGEVLKRVSLE 256
Query: 257 LAPSAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDEKARREMKGLVSKMLRENS 316
LAPSAVA KDEKARREMKGLVSKMLRENS
Sbjct: 257 LAPSAVAEEVEVGSGCNGGGNSGGGEEVLVRLLQVVLEGKDEKARREMKGLVSKMLRENS 316
Query: 317 TSRGGAIGGDLRKESLYSACNGCLRLLHEQFEMAAGGDQSEVAQIARQADNLHWMLDILV 376
TSRGGAIGGDLRKESLYSACNGCLRLLHEQFEMAAGGDQSEVAQIARQADNLHWMLDILV
Sbjct: 317 TSRGGAIGGDLRKESLYSACNGCLRLLHEQFEMAAGGDQSEVAQIARQADNLHWMLDILV 376
Query: 377 ERQIAEDFLRTWAMQIELAELHGKVPAIHRYEVSRVTARLFVGVGKGQILVSKEVRCQLL 436
ERQIAEDFLRTWAMQIELAELHGKVPAIHRYEVSRVTARLFVGVGKGQILVSKEVRCQLL
Sbjct: 377 ERQIAEDFLRTWAMQIELAELHGKVPAIHRYEVSRVTARLFVGVGKGQILVSKEVRCQLL 436
Query: 437 STWLEPFYEDFGWMRRACKGLDRHLIEDGLANTILTLPLATQQEILLAWFNRFLNSGEDC 496
STWLEPFYEDFGWMRRACKGLDRHLIEDGLANTILTLPLATQQEILLAWFNRFLNSGEDC
Sbjct: 437 STWLEPFYEDFGWMRRACKGLDRHLIEDGLANTILTLPLATQQEILLAWFNRFLNSGEDC 496
Query: 497 PNIQRGFEVWWRRAFWKRNGEPEQPPRLRITAICENS 533
PNIQRGFEVWWRRAFWKRNGEPEQPPRLRITAICENS
Sbjct: 497 PNIQRGFEVWWRRAFWKRNGEPEQPPRLRITAICENS 533
>Os07g0123500 Thioredoxin-related domain containing protein
Length = 527
Score = 333 bits (855), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/417 (41%), Positives = 250/417 (59%), Gaps = 41/417 (9%)
Query: 106 FNDADSSDVRLTLTSKDGLSVTLCVHRHILVAHSRFFAAKLSDRWSKQQRTLPHIVEISD 165
F +SD+++ L ++G++V + VH++IL +S FFA KLS +++ +E+SD
Sbjct: 123 FGQLHTSDLKVMLYGREGVAVKMIVHKNILAENSTFFADKLS------RQSPVSCIEVSD 176
Query: 166 CDDVEVYVETLRLMYCKDLRRRLMREDVSKVLGILKVSAAIVFDAGVLSCLEYLEAAPWA 225
C+DVE++VET+ LMYCKD+++RL+++ V++VL ILKV+ ++ F ++SCL YLEA PW
Sbjct: 177 CEDVEIFVETVGLMYCKDVKQRLIKQAVARVLRILKVAESLGFPTCIMSCLNYLEAVPWV 236
Query: 226 EDDDEKVAALLTQLHLENSGAGEVLKRVSLELA--PSAVAXXXXXXXXXXXXXXXXXXXX 283
D++E V + + QLH EN G +LKRV+ +L PS
Sbjct: 237 GDEEENVLSSIRQLHCENYGVSPLLKRVASDLTNPPSDT--------------------- 275
Query: 284 XXXXXXXXXXXXKDEKARREMKGLVSKMLRENSTSRGGAIGGDLRKESLYSACNGCLRLL 343
D++ RREMK LV K+L+EN+ G+ D + YS+C CL L
Sbjct: 276 -LAHIIELVLKSSDDRGRREMKSLVLKLLKENNIWTNGS--SDSCVVTFYSSCRNCLESL 332
Query: 344 HEQFEMAAGGDQSEVA---------QIARQADNLHWMLDILVERQIAEDFLRTWAMQIEL 394
F A+ + SE + QI +ADNL W+ +IL +R A++ WA Q EL
Sbjct: 333 SNLFRQASEPEFSEQSSDSKEVIFRQITLEADNLLWLAEILADRNAADELTSIWASQGEL 392
Query: 395 AELHGKVPAIHRYEVSRVTARLFVGVGKGQILVSKEVRCQLLSTWLEPFYEDFGWMRRAC 454
A+LH ++P +HR+ +S VTARLFV VGKG+ L SKE R LL WL+P +D+ W++ C
Sbjct: 393 AKLHCRIPVMHRHLISCVTARLFVAVGKGEALPSKETRQLLLDVWLQPLMDDYNWLQHGC 452
Query: 455 KGLDRHLIEDGLANTILTLPLATQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAF 511
+ DR +IE+G+ TILTLPL QQ ILL W RFL G+ CPN+QR FEVWWRR F
Sbjct: 453 RWFDRKVIEEGIGQTILTLPLEDQQSILLTWLGRFLKVGDSCPNLQRAFEVWWRRTF 509
>Os03g0769400 Conserved hypothetical protein
Length = 522
Score = 328 bits (841), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 175/430 (40%), Positives = 248/430 (57%), Gaps = 40/430 (9%)
Query: 106 FNDADSSDVRLTLTSKDGLSVTLCVHRHILVAHSRFFAAKLSDRWSKQQRTLPHIVEISD 165
F + SD+++ L KDG++V + VHR+IL +S +FA KLS +++ +E+ D
Sbjct: 120 FGQLEMSDLKVVLYGKDGVAVKMSVHRNILAENSTWFADKLS------RQSPMSSMEVPD 173
Query: 166 CDDVEVYVETLRLMYCKDLRRRLMREDVSKVLGILKVSAAIVFDAGVLSCLEYLEAAPWA 225
C+DVE+YVET+ LMYC D ++RL+++ V +VL ILKV+ + F A VLSCLEYLEA PW
Sbjct: 174 CEDVEIYVETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWV 233
Query: 226 EDDDEKVAALLTQLHLENSGAGEVLKRVSLELAPSAVAXXXXXXXXXXXXXXXXXXXXXX 285
+++E V + + L N G +LKRV +L
Sbjct: 234 GEEEENVVSSVQHLQSGNYGVSPILKRVCSDLTSPP--------------------NDTF 273
Query: 286 XXXXXXXXXXKDEKARREMKGLVSKMLRENSTSRGGAIGGDLRKESLYSACNGCLRLLHE 345
+++ RREMK LV K+L+ENS+ ++ D+ E+LYS+C CL L
Sbjct: 274 VHIIELVLKSGEDRGRREMKSLVLKLLKENSSCTSTSV--DIYAETLYSSCQNCLESLLT 331
Query: 346 QFEMAAGGDQSEVA---------QIARQADNLHWMLDILVERQIAEDFLRTWAMQIELAE 396
F A D +E + QIA +ADNL W+ +IL +R A +F W+ Q ELAE
Sbjct: 332 LFRQATADDFAEQSLDLKEPVFRQIALEADNLLWLTEILADRNAAGEFAVMWSNQGELAE 391
Query: 397 LHGKVPAIHRYEVSRVTARLFVGVGKGQILVSKEVRCQLLSTWLEPFYEDFGWMRRACKG 456
LH K+P R+ VS VTARLFV +GKG +L SK+ R LL WL+P +D+ W++ C+
Sbjct: 392 LHSKLPTKSRHLVSCVTARLFVAIGKGDMLPSKDTRKLLLDVWLQPLMDDYNWLQHGCRS 451
Query: 457 LDRHLIEDGLANTILTLPLATQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAF---WK 513
DR ++E+G+ TILTLPL QQ ILL+W FL G+ CPN+Q+ FEVWW+R F +
Sbjct: 452 FDRKVVEEGIGRTILTLPLEDQQTILLSWLGSFLKVGDSCPNLQKAFEVWWKRTFVRPYV 511
Query: 514 RNGEPEQPPR 523
G QP R
Sbjct: 512 EQGNQSQPGR 521
>Os04g0278000 Similar to PRLI-interacting factor G (Fragment)
Length = 527
Score = 236 bits (603), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/405 (34%), Positives = 217/405 (53%), Gaps = 29/405 (7%)
Query: 113 DVRLTLTSKDGLSVTLCVHRHILVAHSRFFAAKLSDRWSKQQRTLPHIVEISDCDDVEVY 172
D++L L +DG SV + + +L S FFAA + I E+ ++VE +
Sbjct: 137 DLKLCLRGRDGRSVAMELDSAVLCESSAFFAAMAPPPEATVGGGSKRI-EVDGVENVEAF 195
Query: 173 VETLRLMYCKDLRRRLMREDVSKVLGILKVSAAIVFDAGVLSCLEYLEAAPWAEDDDEKV 232
ET+ LM+ D R +R VS+ +G+L+VS++I+FD G+ SCLEY+EA PW E+++EK+
Sbjct: 196 KETVELMFEADPMRWFVRAGVSRAIGVLEVSSSIMFDRGIKSCLEYIEAVPWNENEEEKL 255
Query: 233 AALLTQLHLENSGAGEVLKRVSLELAPSAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 292
L + + + + +VL R L P +
Sbjct: 256 KNLFARCTFDEAVSKDVLAR----LKPQCQSISDDVTVHLIQSVTSST------------ 299
Query: 293 XXXKDEKARREMKGLVSKMLRENSTSRGGAIGGDLRKESLYSACNGCLRLLHEQFEMAAG 352
+ AR+EM+ LV+ +L +S + G L K SLY C CL L E F
Sbjct: 300 ----NTGARKEMQSLVNGLLSRSSVYQKDLSG--LNKGSLYQICCSCLNSLVEHFTEDLC 353
Query: 353 GDQ------SEVAQIARQADNLHWMLDILVERQIAEDFLRTWAMQIELAELHGKVPAIHR 406
D+ + ++++Q +NL+W+ DILV +AE+F+ WA Q +L +HG+ A+ R
Sbjct: 354 SDKIVRDSKPMIERVSKQTENLNWLFDILVNNDMAEEFVELWAKQEDLISMHGQASAMFR 413
Query: 407 YEVSRVTARLFVGVGKGQILVSKEVRCQLLSTWLEPFYEDFGWMRRACKGLDRHLIEDGL 466
YE+SR++A +F+ +GKG++ ++R QL W P DFGW++R KGLD ++E+ L
Sbjct: 414 YELSRISANVFIVLGKGKVQCPSDLRSQLFYGWFRPMLMDFGWLQRCSKGLDMRMLEENL 473
Query: 467 ANTILTLPLATQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAF 511
+LTLPL QQ + WF F + G +CPN+ R F+VWWRR+F
Sbjct: 474 GQALLTLPLQQQQSLFEEWFQCFASRGTECPNLSRAFQVWWRRSF 518
>Os07g0259700 Similar to PRLI-interacting factor G (Fragment)
Length = 564
Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/419 (32%), Positives = 216/419 (51%), Gaps = 36/419 (8%)
Query: 113 DVRLTLTSKDGLS-VTLCVHRHILVAHSRFFAAKLSDRWSKQQRTLP-HIVEISDCDDVE 170
D+RL L +DG + V + + +L S FFAA R +E+ D+VE
Sbjct: 166 DLRLFLRGRDGSTCVVMELDSGVLCDSSAFFAAMAPPRGPAGDGGGSGRRIEVDGVDNVE 225
Query: 171 VYVETLRLMYCKDLRRRLMREDVSKVLGILKVSAAIVFDAGVLSCLEYLEAAPWAEDDDE 230
+ + LMY D R L VS+ + +L+VS++I+F+ GV CL Y+EA PW E+++E
Sbjct: 226 AFRAAVELMYQPDPLRWLAAAGVSRSIDVLEVSSSIMFERGVKLCLSYIEAVPWNENEEE 285
Query: 231 KVAALLTQLHLENSGAGEVLKRVSLELAPSAVAXXXXXXXXXXXXXXXXXXXXXXXXXXX 290
K+ L + + + + +VL R L P + +
Sbjct: 286 KLKNLFARCTFDEAISQDVLAR----LRPHSWSSSEDLTVHLIQSVTSS----------- 330
Query: 291 XXXXXKDEKARREMKGLVSKMLRENSTSRGGAIGGDLRKESLYSACNGCLRLLHEQFEMA 350
+ AR++M+ LV+ +L ++S + G L +ESLY+ C CL L + ++ A
Sbjct: 331 -----TNSGARKDMQSLVNGLLSKSSVYQKDMAG--LNRESLYNICYACLNSLVDLYDEA 383
Query: 351 A------------GGDQSEVAQIARQADNLHWMLDILVERQIAEDFLRTWAMQIELAELH 398
G + + +I++Q +NL+W+LDILV +AE+F+ WA Q L +H
Sbjct: 384 TEATNHTAQALVIKGSKPFIERISQQTENLNWLLDILVNIDMAEEFVELWAKQDRLIRIH 443
Query: 399 GKVPAIHRYEVSRVTARLFVGVGKGQILVSKEVRCQLLSTWLEPFYEDFGWMRRACKGLD 458
+ + RYE+SR++A +F+ +GKG++ E+R L W P DFGW++R KGLD
Sbjct: 444 EQASPMMRYELSRISASVFIALGKGKVQCRGELRSLLFYGWFSPMLLDFGWLQRCSKGLD 503
Query: 459 RHLIEDGLANTILTLPLATQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAFWKRNGE 517
+E+ L +LTLPL QQ + WF F + G +CPN+ R F+VWWRR+F + + E
Sbjct: 504 VRSLEENLGQALLTLPLKQQQCLFEEWFQCFASKGSECPNLTRAFQVWWRRSFVRSSVE 562
>Os12g0596600 Hypothetical protein
Length = 233
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 148/217 (68%), Gaps = 4/217 (1%)
Query: 297 DEKARREMKGLVSKMLRENSTSRGGAIGGDLRKESLYSACNGCLRLLHEQFEMAAGGDQS 356
D++ARREMK LV +L++++ G+ D+ E LYS+C GCL L F A G + S
Sbjct: 10 DDRARREMKALVLNLLKDSNHCTDGS--SDISSELLYSSCQGCLDRLRLLFSEATGQEFS 67
Query: 357 E--VAQIARQADNLHWMLDILVERQIAEDFLRTWAMQIELAELHGKVPAIHRYEVSRVTA 414
QI + DNL W+++ILV ++I +DF+ WA Q ++AELHGK+P R+ VS +TA
Sbjct: 68 VELTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGKLPVASRHTVSCITA 127
Query: 415 RLFVGVGKGQILVSKEVRCQLLSTWLEPFYEDFGWMRRACKGLDRHLIEDGLANTILTLP 474
RLFVG+G+G++L SK R LL WL+P +D+ W++ +C+ DR L+E+G+ TILTLP
Sbjct: 128 RLFVGIGRGEMLPSKNTRLLLLQVWLQPLIDDYSWLQCSCRSFDRKLVEEGIGQTILTLP 187
Query: 475 LATQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRRAF 511
L Q+ +LLAW RFL G++CPN+QR FEVWWRR F
Sbjct: 188 LEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTF 224
>Os12g0188500 Conserved hypothetical protein
Length = 602
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 177/333 (53%), Gaps = 36/333 (10%)
Query: 186 RRLMREDVSKVLGILKVSAAIVFDAGVLSCLEYLEAAPWAEDDDEKVAALLTQLHLENSG 245
RRL R V++ + +L+VS +++FD GV +CL+YLEA PW+E ++E++ +LL+Q +
Sbjct: 203 RRLSRAGVARAIAVLEVSFSLMFDRGVTNCLKYLEAVPWSEPEEERIKSLLSQYPCNKTV 262
Query: 246 AGEVLKRVSLELAPSAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDEKARREMK 305
+ ++L R+ + PS+ A + AR++++
Sbjct: 263 SQDLLARLQPQ-EPSSSAELVVELMDSITKG-------------------TNNNARKDLR 302
Query: 306 GLVSKMLRENSTSRGGAIGGD--LRKESLYSACNGCLRLLHEQFEMAA---GGDQSEVA- 359
LV +L S I D L ++YS C+ CL L E F A+ Q+ ++
Sbjct: 303 TLVDGILSRTSI----YIKSDKELDMMNIYSICHTCLNCLVELFGEASDLGPSGQTTISV 358
Query: 360 ------QIARQADNLHWMLDILVERQIAEDFLRTWAMQIELAELHGKVPAIHRYEVSRVT 413
+I +Q +NL W+L IL++RQ+ E+F+ WA Q L+ +H + + RYE+SR++
Sbjct: 359 GKGPHERICKQVENLTWLLQILIDRQMGEEFVDLWASQNTLSTMHERFSPMVRYELSRIS 418
Query: 414 ARLFVGVGKGQILVSKEVRCQLLSTWLEPFYEDFGWMRRACKGLDRHLIEDGLANTILTL 473
A +F+ +G G++ + R + W P DFGW+RR KGL+ +EDG+ +LTL
Sbjct: 419 ATIFIAMGSGKLHCTSTSRLGIFEAWFRPLLVDFGWLRRCPKGLNMATLEDGIGQALLTL 478
Query: 474 PLATQQEILLAWFNRFLNSGEDCPNIQRGFEVW 506
L QQ + + WF F G +CPN+ R F+V+
Sbjct: 479 TLKHQQVLFMEWFETFSGQGRECPNLMRAFQVF 511
>Os07g0668800 Conserved hypothetical protein
Length = 439
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 100/438 (22%), Positives = 177/438 (40%), Gaps = 59/438 (13%)
Query: 105 QFNDADSSDVRLTLTSKDGLSVTLCVHRHILVAHSRFFAAKLSDRWSKQQRTLPHIVEIS 164
+ D +SDV + L + +G L H +L A SR+FA +LSD W Q
Sbjct: 12 KIGDLATSDVVVRLRTPEGRDEWLYCHSGVLAAGSRYFADRLSDDWPTCQILGSRYCVEV 71
Query: 165 DCD--DVEVYVETLRLMYCKDLRRRLMREDVSKVLGILKVSAAIVFDAGVLSCLEYLEAA 222
C D+ +V LRL+Y + R V LG+L+ +A + +C++YLE+A
Sbjct: 72 HCQELDLSPHVTALRLLYAAEPCSRF---GVRGALGVLQAAAHLACPRVAAACVDYLESA 128
Query: 223 PWAEDDDEKVAALLTQLHLENSGAGEVLKRVSLELAPSAVAXXXXXXXXXXXXXXXXXXX 282
PW E D+E++ + L + VL R+ + P+ VA
Sbjct: 129 PWDEADEEEILRTIPCLGPQYEC---VLARLR-PIDPAPVA-----------------GI 167
Query: 283 XXXXXXXXXXXXXKDEKARREMKGLVSKMLRENSTSRGGAIGGDLRKESLYSACNGCL-- 340
++ + + + ML E+ + A D+ + + L
Sbjct: 168 LLSAFRHATSTRSPPQELKSAAQEQLEYMLTEDDDAPLLAFDDDIVRSQVKDCVAALLSR 227
Query: 341 ------RLLHEQFEMAAGGDQSEVAQ-IARQADNLHWMLDILVERQIAEDFLRTW-AMQI 392
+L EQ E G +EV Q + ++ W+ IL + ++ + + W +
Sbjct: 228 FSGFTSSILMEQGEAPLGHGDAEVQQELHSLVSDISWVCQILSKLEMMKCVVVYWIGVSS 287
Query: 393 ELAE----LHGKVPAIH-RYEVSRVTARLFVGVGKGQILVSKEVRCQLLSTWL------- 440
++ E G + + R +V V+A++ + G I++ E RC ++ W+
Sbjct: 288 DVVEAVDKACGGISCLKTRLKVIEVSAKVLEAIAFGNIVLPTEKRCDAVNVWIGFARRTK 347
Query: 441 ----EPFYEDFGWMRRACK-GLDRHL---IEDGLANTILTLPLATQQEILLAWFNRFLNS 492
P ++D A K LD + +E + + +LTLP +Q +IL W +
Sbjct: 348 PLVGHPEHDDDDGDAEAPKINLDSEVWQSLESAIVSIVLTLPSNSQADILSDWLQ---SK 404
Query: 493 GEDCPNIQRGFEVWWRRA 510
P++ FEVW R+
Sbjct: 405 HAKYPDLTEAFEVWCYRS 422
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,860,432
Number of extensions: 618329
Number of successful extensions: 1567
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1556
Number of HSP's successfully gapped: 12
Length of query: 533
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 427
Effective length of database: 11,501,117
Effective search space: 4910976959
Effective search space used: 4910976959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)