Os03g0769400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0769400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.25 | 0.275 | 11.9 | 1.69 | 0.206 | -0.634 | 0.528 | 0.624 | -0.109 | 22.2 | 19.7 | 1576 | -- | -- |
| 34.8 | 0.275 | 11.9 | 1.69 | 0.207 | -0.761 | 0.48 | -- | -0.108 | 22.4 | 19 | 2883 | -- | -- |
| 35.33 | 0.277 | 11.9 | 1.66 | 0.202 | -0.631 | -- | 0.595 | -0.11 | 22.2 | 19.65 | 1528 | -- | -- |
| 35.64 | 0.278 | 11.9 | 1.66 | 0.216 | -0.754 | -- | -- | -0.114 | 22.5 | 19.02 | 2725 | -- | -- |
| 37.85 | 0.287 | 11.9 | 1.67 | -- | -0.613 | -- | 0.668 | -0.111 | -- | 19.6 | 1575 | -- | -- |
| 44.01 | 0.311 | 11.9 | 1.31 | 0.209 | -- | 0.453 | -- | -0.264 | 22.2 | -- | -- | -- | -- |
| 44.82 | 0.313 | 11.9 | 1.29 | 0.208 | -- | -- | -- | -0.264 | 21.9 | -- | -- | -- | -- |
| 38.16 | 0.288 | 11.9 | 1.69 | -- | -0.85 | -- | -- | -0.106 | -- | 18.6 | 2972 | -- | -- |
| 88.1 | 0.437 | 12 | -- | 0.194 | 0.139 | -- | -- | -0.432 | 23 | 26.93 | 1505 | -- | -- |
| 47.41 | 0.322 | 11.9 | 1.3 | -- | -- | -- | -- | -0.264 | -- | -- | -- | -- | -- |
| 88.96 | 0.441 | 12 | -- | 0.214 | -- | -- | -- | -0.409 | 22.4 | -- | -- | -- | -- |
| 66.68 | 0.38 | 12 | -- | -- | 0.769 | -- | -- | -0.616 | -- | 19.4 | 47520 | -- | -- |
| 91.76 | 0.447 | 12 | -- | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 2 | 32.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 8 | 32.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 11 | 32.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 29 | 32.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 30 | 32.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 38 | 32.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 85 | 33.18 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 95 | 33.23 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 329 | 34.00 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 348 | 34.07 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 13 |
| 352 | 34.08 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 357 | 34.08 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 358 | 34.09 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 365 | 34.10 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 3 | 8 |
| 367 | 34.10 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 7 | NA |
| 369 | 34.10 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 22 |
| 373 | 34.12 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 374 | 34.12 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 377 | 34.12 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 14 |
| 381 | 34.13 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 421 | 34.19 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 426 | 34.20 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 430 | 34.21 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 458 | 34.25 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 507 | 34.29 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 9 | 21 |
| 519 | 34.30 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 593 | 34.37 | atmosphere | 995 | 43200 | < th | dose dependent | no | NA | NA |
| 614 | 34.39 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 704 | 34.49 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 714 | 34.51 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 717 | 34.52 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 728 | 34.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 729 | 34.53 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 741 | 34.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 749 | 34.56 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 756 | 34.58 | humidity | 50 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 769 | 34.61 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 774 | 34.62 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 786 | 34.63 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 18 | NA |
| 816 | 34.67 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 13 |
| 893 | 34.83 | atmosphere | 995 | 43200 | > th | dose independent | sin | 4 | NA |
| 933 | 34.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 934 | 34.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 949 | 34.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 953 | 34.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 973 | 34.98 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 983 | 35.01 | wind | 9 | 43200 | < th | dose independent | rect. | 23 | 1 |