BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0769400 Os03g0769400|AK068827
(522 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0769400 Conserved hypothetical protein 1054 0.0
Os07g0123500 Thioredoxin-related domain containing protein 783 0.0
Os12g0596600 Hypothetical protein 329 3e-90
Os04g0579700 Similar to Predicted protein 326 3e-89
Os07g0259700 Similar to PRLI-interacting factor G (Fragment) 217 2e-56
Os04g0278000 Similar to PRLI-interacting factor G (Fragment) 207 1e-53
Os12g0188500 Conserved hypothetical protein 168 1e-41
Os06g0129200 Conserved hypothetical protein 80 4e-15
>Os03g0769400 Conserved hypothetical protein
Length = 522
Score = 1054 bits (2726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/522 (97%), Positives = 510/522 (97%)
Query: 1 MTEFKVGSLDARATKIRNVPIAVTPEGFWCCPSQAVLQKTMKNQNQQAKPKGGASPLASK 60
MTEFKVGSLDARATKIRNVPIAVTPEGFWCCPSQAVLQKTMKNQNQQAKPKGGASPLASK
Sbjct: 1 MTEFKVGSLDARATKIRNVPIAVTPEGFWCCPSQAVLQKTMKNQNQQAKPKGGASPLASK 60
Query: 61 ASSVQRAPTISSERRAHSTPTRSRINSDEQKCAPAENSTPNPPKVANDRPQKQHKISVGF 120
ASSVQRAPTISSERRAHSTPTRSRINSDEQKCAPAENSTPNPPKVANDRPQKQHKISVGF
Sbjct: 61 ASSVQRAPTISSERRAHSTPTRSRINSDEQKCAPAENSTPNPPKVANDRPQKQHKISVGF 120
Query: 121 GQLEMSDLKVVLYGKDGVAVKMSVHRNILAENSTWFADKLSRQSPMSSMEVPDCEDVEIY 180
GQLEMSDLKVVLYGKDGVAVKMSVHRNILAENSTWFADKLSRQSPMSSMEVPDCEDVEIY
Sbjct: 121 GQLEMSDLKVVLYGKDGVAVKMSVHRNILAENSTWFADKLSRQSPMSSMEVPDCEDVEIY 180
Query: 181 VETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWXXXXXXXX 240
VETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPW
Sbjct: 181 VETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWVGEEEENV 240
Query: 241 XXXXQHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVLKSGEDRGRREMKSLVLKLL 300
QHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVLKSGEDRGRREMKSLVLKLL
Sbjct: 241 VSSVQHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVLKSGEDRGRREMKSLVLKLL 300
Query: 301 KENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQATADDFAEQSLDLKEPVFRQIALEA 360
KENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQATADDFAEQSLDLKEPVFRQIALEA
Sbjct: 301 KENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQATADDFAEQSLDLKEPVFRQIALEA 360
Query: 361 DNLLWLTEILADRNAAGEFAVMWSNQGELAELHSKLPTKSRHLVSCVTARLFVAIGKGDM 420
DNLLWLTEILADRNAAGEFAVMWSNQGELAELHSKLPTKSRHLVSCVTARLFVAIGKGDM
Sbjct: 361 DNLLWLTEILADRNAAGEFAVMWSNQGELAELHSKLPTKSRHLVSCVTARLFVAIGKGDM 420
Query: 421 LPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRKVVEEGIGRTILTLPLEDQQTILLSW 480
LPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRKVVEEGIGRTILTLPLEDQQTILLSW
Sbjct: 421 LPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRKVVEEGIGRTILTLPLEDQQTILLSW 480
Query: 481 LGSFLKVGDSCPNLQKAFEVWWKRTFVRPYVEQGNQSQPGRS 522
LGSFLKVGDSCPNLQKAFEVWWKRTFVRPYVEQGNQSQPGRS
Sbjct: 481 LGSFLKVGDSCPNLQKAFEVWWKRTFVRPYVEQGNQSQPGRS 522
>Os07g0123500 Thioredoxin-related domain containing protein
Length = 527
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/515 (73%), Positives = 429/515 (83%), Gaps = 3/515 (0%)
Query: 1 MTEFKVGSLDARATKIRNVPIAVTPEGFWCCPSQAVLQKTMKNQNQQAKPKGGASPLASK 60
M EF+ G LD + KIRNVPIAVTPEGFWCCPSQA+LQK+MKNQNQ A+PKGGASP SK
Sbjct: 1 MEEFRFGRLDGQPAKIRNVPIAVTPEGFWCCPSQAILQKSMKNQNQHARPKGGASPSVSK 60
Query: 61 ASSVQRAPTISSERRAHSTPTRSRINSDEQKCAPAENSTPNPPKVA---NDRPQKQHKIS 117
ASSVQR PTIS E+R HSTPTRSR NSDEQ PA+++ P+ PKV+ + R KQHKIS
Sbjct: 61 ASSVQRTPTISLEKRTHSTPTRSRTNSDEQVLPPADDAIPDQPKVSPVPDKRHNKQHKIS 120
Query: 118 VGFGQLEMSDLKVVLYGKDGVAVKMSVHRNILAENSTWFADKLSRQSPMSSMEVPDCEDV 177
VGFGQL SDLKV+LYG++GVAVKM VH+NILAENST+FADKLSRQSP+S +EV DCEDV
Sbjct: 121 VGFGQLHTSDLKVMLYGREGVAVKMIVHKNILAENSTFFADKLSRQSPVSCIEVSDCEDV 180
Query: 178 EIYVETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWXXXXX 237
EI+VETVGLMYC D KQRLIKQ+V RVLRILKVAE LGF C++SCL YLEAVPW
Sbjct: 181 EIFVETVGLMYCKDVKQRLIKQAVARVLRILKVAESLGFPTCIMSCLNYLEAVPWVGDEE 240
Query: 238 XXXXXXXQHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVLKSGEDRGRREMKSLVL 297
+ L NYGVSP+LKRV SDLT+PP+DT HIIELVLKS +DRGRREMKSLVL
Sbjct: 241 ENVLSSIRQLHCENYGVSPLLKRVASDLTNPPSDTLAHIIELVLKSSDDRGRREMKSLVL 300
Query: 298 KLLKENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQATADDFAEQSLDLKEPVFRQIA 357
KLLKEN+ T+ S D T YSSC+NCLESL LFRQA+ +F+EQS D KE +FRQI
Sbjct: 301 KLLKENNIWTNGSSDSCVVTFYSSCRNCLESLSNLFRQASEPEFSEQSSDSKEVIFRQIT 360
Query: 358 LEADNLLWLTEILADRNAAGEFAVMWSNQGELAELHSKLPTKSRHLVSCVTARLFVAIGK 417
LEADNLLWL EILADRNAA E +W++QGELA+LH ++P RHL+SCVTARLFVA+GK
Sbjct: 361 LEADNLLWLAEILADRNAADELTSIWASQGELAKLHCRIPVMHRHLISCVTARLFVAVGK 420
Query: 418 GDMLPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRKVVEEGIGRTILTLPLEDQQTIL 477
G+ LPSK+TR+LLLDVWLQPLMDDYNWLQHGCR FDRKV+EEGIG+TILTLPLEDQQ+IL
Sbjct: 421 GEALPSKETRQLLLDVWLQPLMDDYNWLQHGCRWFDRKVIEEGIGQTILTLPLEDQQSIL 480
Query: 478 LSWLGSFLKVGDSCPNLQKAFEVWWKRTFVRPYVE 512
L+WLG FLKVGDSCPNLQ+AFEVWW+RTFVRPY +
Sbjct: 481 LTWLGRFLKVGDSCPNLQRAFEVWWRRTFVRPYTD 515
>Os12g0596600 Hypothetical protein
Length = 233
Score = 329 bits (844), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 154/239 (64%), Positives = 191/239 (79%), Gaps = 7/239 (2%)
Query: 276 IIELVLKSGEDRGRREMKSLVLKLLKENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQ 335
I+E+VLKS +DR RREMK+LVL LLK+++ CT S DI +E LYSSCQ CL+ L LF +
Sbjct: 1 IMEMVLKSTDDRARREMKALVLNLLKDSNHCTDGSSDISSELLYSSCQGCLDRLRLLFSE 60
Query: 336 ATADDFAEQSLDLKEPVFRQIALEADNLLWLTEILADRNAAGEFAVMWSNQGELAELHSK 395
AT +F+ + + RQI LE DNLLWL EIL ++ +F +W+NQ ++AELH K
Sbjct: 61 ATGQEFSVE-------LTRQITLETDNLLWLVEILVNQRICDDFVALWANQSKIAELHGK 113
Query: 396 LPTKSRHLVSCVTARLFVAIGKGDMLPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRK 455
LP SRH VSC+TARLFV IG+G+MLPSK+TR LLL VWLQPL+DDY+WLQ CRSFDRK
Sbjct: 114 LPVASRHTVSCITARLFVGIGRGEMLPSKNTRLLLLQVWLQPLIDDYSWLQCSCRSFDRK 173
Query: 456 VVEEGIGRTILTLPLEDQQTILLSWLGSFLKVGDSCPNLQKAFEVWWKRTFVRPYVEQG 514
+VEEGIG+TILTLPLEDQ+++LL+WLG FLK+GD+CPNLQ+AFEVWW+RTFVRPYV Q
Sbjct: 174 LVEEGIGQTILTLPLEDQRSMLLAWLGRFLKLGDNCPNLQRAFEVWWRRTFVRPYVSQA 232
>Os04g0579700 Similar to Predicted protein
Length = 533
Score = 326 bits (835), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 189/497 (38%), Positives = 274/497 (55%), Gaps = 62/497 (12%)
Query: 75 RAHSTPTRSRINSDEQ----KCAPAENSTPNPPKVAND-RPQK--------QHKIS--VG 119
+ S+PT + ++EQ + A A +S P PP+ A+ +P + Q +++ +G
Sbjct: 39 KTRSSPTLFDMMANEQDYHPRTAAAIHSIPAPPQQAHPLQPARSMDRQVLLQDRVAELIG 98
Query: 120 -------FGQLEMSDLKVVLYGKDGVAVKMSVHRNILAENSTWFADKLS------RQSPM 166
F + SD+++ L KDG++V + VHR+IL +S +FA KLS +++
Sbjct: 99 SCSPGNQFNDADSSDVRLTLTSKDGLSVTLCVHRHILVAHSRFFAAKLSDRWSKQQRTLP 158
Query: 167 SSMEVPDCEDVEIYVETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEY 226
+E+ DC+DVE+YVET+ LMYC D ++RL+++ V +VL ILKV+ + F A VLSCLEY
Sbjct: 159 HIVEISDCDDVEVYVETLRLMYCKDLRRRLMREDVSKVLGILKVSAAIVFDAGVLSCLEY 218
Query: 227 LEAVPWXXXXXXXXXXXXQHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVL----- 281
LEA PW L N G +LKRV +L V +
Sbjct: 219 LEAAPWAEDDDEKVAALLTQLHLENSGAGEVLKRVSLELAPSAVAEEVEVGSGCNGGGNS 278
Query: 282 ---------------KSGEDRGRREMKSLVLKLLKENSSCTSTSV--DIYAETLYSSCQN 324
+ +++ RREMK LV K+L+ENS+ ++ D+ E+LYS+C
Sbjct: 279 GGGEEVLVRLLQVVLEGKDEKARREMKGLVSKMLRENSTSRGGAIGGDLRKESLYSACNG 338
Query: 325 CLESLLTLFRQATADDFAEQSLDLKEPVFRQIALEADNLLWLTEILADRNAAGEFAVMWS 384
CL L F A D +E + QIA +ADNL W+ +IL +R A +F W+
Sbjct: 339 CLRLLHEQFEMAAGGDQSEVA---------QIARQADNLHWMLDILVERQIAEDFLRTWA 389
Query: 385 NQGELAELHSKLPTKSRHLVSCVTARLFVAIGKGDMLPSKDTRKLLLDVWLQPLMDDYNW 444
Q ELAELH K+P R+ VS VTARLFV +GKG +L SK+ R LL WL+P +D+ W
Sbjct: 390 MQIELAELHGKVPAIHRYEVSRVTARLFVGVGKGQILVSKEVRCQLLSTWLEPFYEDFGW 449
Query: 445 LQHGCRSFDRKVVEEGIGRTILTLPLEDQQTILLSWLGSFLKVGDSCPNLQKAFEVWWKR 504
++ C+ DR ++E+G+ TILTLPL QQ ILL+W FL G+ CPN+Q+ FEVWW+R
Sbjct: 450 MRRACKGLDRHLIEDGLANTILTLPLATQQEILLAWFNRFLNSGEDCPNIQRGFEVWWRR 509
Query: 505 TFVRPYVEQGNQSQPGR 521
F + G QP R
Sbjct: 510 AF---WKRNGEPEQPPR 523
>Os07g0259700 Similar to PRLI-interacting factor G (Fragment)
Length = 564
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/397 (32%), Positives = 203/397 (51%), Gaps = 11/397 (2%)
Query: 127 DLKVVLYGKDG-VAVKMSVHRNILAENSTWFA-------DKLSRQSPMSSMEVPDCEDVE 178
DL++ L G+DG V M + +L ++S +FA +EV ++VE
Sbjct: 166 DLRLFLRGRDGSTCVVMELDSGVLCDSSAFFAAMAPPRGPAGDGGGSGRRIEVDGVDNVE 225
Query: 179 IYVETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWXXXXXX 238
+ V LMY D + L V R + +L+V+ + F+ V CL Y+EAVPW
Sbjct: 226 AFRAAVELMYQPDPLRWLAAAGVSRSIDVLEVSSSIMFERGVKLCLSYIEAVPWNENEEE 285
Query: 239 XXXXXXQHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVLKSGEDRGRREMKSLVLK 298
+L R+ S D VH+I+ V S R++M+SLV
Sbjct: 286 KLKNLFARCTFDEAISQDVLARLRPHSWSSSEDLTVHLIQSVTSSTNSGARKDMQSLVNG 345
Query: 299 LLKENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQAT-ADDFAEQSLDLK--EPVFRQ 355
LL ++S + E+LY+ C CL SL+ L+ +AT A + Q+L +K +P +
Sbjct: 346 LLSKSSVYQKDMAGLNRESLYNICYACLNSLVDLYDEATEATNHTAQALVIKGSKPFIER 405
Query: 356 IALEADNLLWLTEILADRNAAGEFAVMWSNQGELAELHSKLPTKSRHLVSCVTARLFVAI 415
I+ + +NL WL +IL + + A EF +W+ Q L +H + R+ +S ++A +F+A+
Sbjct: 406 ISQQTENLNWLLDILVNIDMAEEFVELWAKQDRLIRIHEQASPMMRYELSRISASVFIAL 465
Query: 416 GKGDMLPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRKVVEEGIGRTILTLPLEDQQT 475
GKG + + R LL W P++ D+ WLQ + D + +EE +G+ +LTLPL+ QQ
Sbjct: 466 GKGKVQCRGELRSLLFYGWFSPMLLDFGWLQRCSKGLDVRSLEENLGQALLTLPLKQQQC 525
Query: 476 ILLSWLGSFLKVGDSCPNLQKAFEVWWKRTFVRPYVE 512
+ W F G CPNL +AF+VWW+R+FVR VE
Sbjct: 526 LFEEWFQCFASKGSECPNLTRAFQVWWRRSFVRSSVE 562
>Os04g0278000 Similar to PRLI-interacting factor G (Fragment)
Length = 527
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/391 (32%), Positives = 207/391 (52%), Gaps = 8/391 (2%)
Query: 127 DLKVVLYGKDGVAVKMSVHRNILAENSTWFAD-----KLSRQSPMSSMEVPDCEDVEIYV 181
DLK+ L G+DG +V M + +L E+S +FA + + +EV E+VE +
Sbjct: 137 DLKLCLRGRDGRSVAMELDSAVLCESSAFFAAMAPPPEATVGGGSKRIEVDGVENVEAFK 196
Query: 182 ETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWXXXXXXXXX 241
ETV LM+ D + ++ V R + +L+V+ + F + SCLEY+EAVPW
Sbjct: 197 ETVELMFEADPMRWFVRAGVSRAIGVLEVSSSIMFDRGIKSCLEYIEAVPWNENEEEKLK 256
Query: 242 XXXQHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVLKSGEDRGRREMKSLVLKLLK 301
+L R+ S +D VH+I+ V S R+EM+SLV LL
Sbjct: 257 NLFARCTFDEAVSKDVLARLKPQCQSISDDVTVHLIQSVTSSTNTGARKEMQSLVNGLLS 316
Query: 302 ENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQATADDFAEQSLDLKEPVFRQIALEAD 361
+S + +LY C +CL SL+ F T D +++ + +P+ +++ + +
Sbjct: 317 RSSVYQKDLSGLNKGSLYQICCSCLNSLVEHF---TEDLCSDKIVRDSKPMIERVSKQTE 373
Query: 362 NLLWLTEILADRNAAGEFAVMWSNQGELAELHSKLPTKSRHLVSCVTARLFVAIGKGDML 421
NL WL +IL + + A EF +W+ Q +L +H + R+ +S ++A +F+ +GKG +
Sbjct: 374 NLNWLFDILVNNDMAEEFVELWAKQEDLISMHGQASAMFRYELSRISANVFIVLGKGKVQ 433
Query: 422 PSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRKVVEEGIGRTILTLPLEDQQTILLSWL 481
D R L W +P++ D+ WLQ + D +++EE +G+ +LTLPL+ QQ++ W
Sbjct: 434 CPSDLRSQLFYGWFRPMLMDFGWLQRCSKGLDMRMLEENLGQALLTLPLQQQQSLFEEWF 493
Query: 482 GSFLKVGDSCPNLQKAFEVWWKRTFVRPYVE 512
F G CPNL +AF+VWW+R+FVR +E
Sbjct: 494 QCFASRGTECPNLSRAFQVWWRRSFVRSSLE 524
>Os12g0188500 Conserved hypothetical protein
Length = 602
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 168/331 (50%), Gaps = 5/331 (1%)
Query: 176 DVEIYVETVGLMYCND----AKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVP 231
+VE E V +M + A +RL + V R + +L+V+ L F V +CL+YLEAVP
Sbjct: 181 EVEAIREAVEMMLEDADEAAAMRRLSRAGVARAIAVLEVSFSLMFDRGVTNCLKYLEAVP 240
Query: 232 WXXXXXXXXXXXXQHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVLKSGEDRGRRE 291
W +L R+ S + V +++ + K + R++
Sbjct: 241 WSEPEEERIKSLLSQYPCNKTVSQDLLARLQPQEPSSSAELVVELMDSITKGTNNNARKD 300
Query: 292 MKSLVLKLLKENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQAT-ADDFAEQSLDLKE 350
+++LV +L S + ++ +YS C CL L+ LF +A+ + ++ + +
Sbjct: 301 LRTLVDGILSRTSIYIKSDKELDMMNIYSICHTCLNCLVELFGEASDLGPSGQTTISVGK 360
Query: 351 PVFRQIALEADNLLWLTEILADRNAAGEFAVMWSNQGELAELHSKLPTKSRHLVSCVTAR 410
+I + +NL WL +IL DR EF +W++Q L+ +H + R+ +S ++A
Sbjct: 361 GPHERICKQVENLTWLLQILIDRQMGEEFVDLWASQNTLSTMHERFSPMVRYELSRISAT 420
Query: 411 LFVAIGKGDMLPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRKVVEEGIGRTILTLPL 470
+F+A+G G + + +R + + W +PL+ D+ WL+ + + +E+GIG+ +LTL L
Sbjct: 421 IFIAMGSGKLHCTSTSRLGIFEAWFRPLLVDFGWLRRCPKGLNMATLEDGIGQALLTLTL 480
Query: 471 EDQQTILLSWLGSFLKVGDSCPNLQKAFEVW 501
+ QQ + + W +F G CPNL +AF+V+
Sbjct: 481 KHQQVLFMEWFETFSGQGRECPNLMRAFQVF 511
>Os06g0129200 Conserved hypothetical protein
Length = 433
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 102/416 (24%), Positives = 163/416 (39%), Gaps = 45/416 (10%)
Query: 120 FGQLEMSDLKVVLYGKDGVAVKMSVHRNILAENSTWFADKLSRQSPMSSMEVP-DC--ED 176
FG SD++V D A H ++L+ NS +FAD LSR S+ + DC D
Sbjct: 12 FGDQTTSDVRVCFKRADDQAEWFCCHSSVLSGNSKYFADWLSRNDIGSNNCIGVDCISAD 71
Query: 177 VEIYVETVGLMYCNDAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAVPWXXXX 236
E YV+ + L+Y +SV + +L+ + LL + SC+EYLEA W
Sbjct: 72 YEHYVKVLKLIYLPAESIIDSFESVRSAVGVLRASTLLKCELITRSCIEYLEAASWDEKE 131
Query: 237 XXXXXXXXQHLQSGNYGVSPILKRVCSDLTSPPNDTFVHIIELVLKSGE------DRGRR 290
Q L G+ +L R+ + S + F+ I D +
Sbjct: 132 EEEILEVAQSL--GSEEAVALLARLQAPNVSAVKNVFISAIRFATSMESPSPPFLDDLKT 189
Query: 291 EMKSLVLKLLKENSSCTSTSVDIYAETLYSSCQNCLESLLTLFRQATADDFAEQSLDLKE 350
+ + +L E+ ++D E + S + L+ L + + D + L E
Sbjct: 190 SAQEQIDFMLHEDDDTALVTMD---EDVRSVVREGLKKLFSTLKIGL-DLLTSEYEQLPE 245
Query: 351 PVFRQIALEADNLLWLTEILADRNAAGEFAVMWSNQGE--LAELHSKLPTKSRHLVSC-- 406
+++ ++ W+ +L EF WS L+ + K + LV
Sbjct: 246 QAEQRVLCSLADIDWMANVLTKIEMMNEFVSGWSEISGYVLSVVQDKKYSSGLWLVKAKL 305
Query: 407 --VTARLFVAIGKGDMLPSKDTRKLLLDVWLQPLMDDYNWLQHGCRSFDRKV-------- 456
VT + F A+G G ++ +R L +WL P M Q R D K
Sbjct: 306 IEVTGKAFDAVGYGSVVFPASSRVHFLRMWL-PFM------QTTKRLLDEKSKDDAIPQM 358
Query: 457 -------VEEGIGRTILTLPLEDQQTILLSWLGSFLKVGDSCPNLQKAFEVWWKRT 505
+E I +L LP DQ IL W+ + + P+L +AFEVW R+
Sbjct: 359 DADLFQNIEGAIVSLVLALPSGDQADILGEWMKNAEQF--RYPDLTEAFEVWCYRS 412
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,411,183
Number of extensions: 709671
Number of successful extensions: 2379
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2364
Number of HSP's successfully gapped: 8
Length of query: 522
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 417
Effective length of database: 11,553,331
Effective search space: 4817739027
Effective search space used: 4817739027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)