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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0188500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.19 (0.0191) R2 : 0.00117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0294 (0.0402) R2dN8 : 0.00151 R2N8 : 0.00117
σ : 0.359
deviance : 59.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.79 0.351 3.2 0.126 0.165 0.147 -0.408 0.895 0.0136 5.7 91.59 5912 -- --
56.89 0.351 3.19 0.0775 0.19 0.183 -0.408 -- 9.05e-05 5.82 95.98 4784 -- --
56.18 0.349 3.2 0.136 0.168 0.139 -- 0.942 0.0179 5.86 99.23 6093 -- --
57.32 0.353 3.19 0.0642 0.183 0.178 -- -- -0.00694 5.81 108.5 4787 -- --
57.56 0.353 3.2 0.139 -- 0.14 -- 0.92 0.0208 -- 105.9 5856 -- --
57.32 0.355 3.19 0.0526 0.165 -- -0.427 -- 0.0299 5.63 -- -- -- --
57.77 0.356 3.18 0.0507 0.162 -- -- -- 0.0317 5.79 -- -- -- --
58.7 0.357 3.2 0.0767 -- 0.179 -- -- -0.000988 -- 125.2 7025 -- --
57.41 0.353 3.2 -- 0.185 0.181 -- -- -0.017 5.79 112.7 4786 -- --
59.14 0.359 3.19 0.0557 -- -- -- -- 0.0355 -- -- -- -- --
57.84 0.356 3.19 -- 0.163 -- -- -- 0.0261 5.77 -- -- -- --
58.8 0.357 3.2 -- -- 0.176 -- -- -0.0112 -- 133.1 5601 -- --
59.22 0.359 3.19 -- -- -- -- -- 0.0294 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.59 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 52.80 atmosphere 1000.0 30 > th dose independent rect. 3 23
3 52.89 temperature 25.0 90 > th dose dependent rect. 1 3
4 52.91 radiation 1.0 10 > th dose independent rect. 18 1
15 52.95 atmosphere 1005.0 10 > th dose dependent rect. 2 2
16 52.99 radiation 1.0 4320 < th dose dependent rect. 3 1
17 52.99 radiation 10.0 43200 < th dose dependent rect. 3 1
19 53.01 temperature 20.0 30 > th dose dependent rect. 2 1
24 53.02 wind 9.0 1440 < th dose independent rect. 3 1
25 53.02 temperature 10.0 1440 > th dose independent rect. 3 1
28 53.02 temperature 30.0 1440 < th dose independent rect. 3 1
32 53.02 humidity 50.0 1440 > th dose independent rect. 3 1
41 53.02 atmosphere 995.0 1440 > th dose independent rect. 3 1
42 53.02 radiation 1.0 1440 < th dose independent rect. 3 1
62 53.02 temperature 10.0 1440 > th dose independent rect. 4 23
77 53.04 temperature 20.0 30 > th dose independent rect. 2 1
79 53.05 atmosphere 1005.0 30 > th dose independent rect. 2 1
85 53.09 wind 3.0 30 < th dose independent rect. 2 1
87 53.09 wind 3.0 30 < th dose dependent rect. 2 1
89 53.10 temperature 25.0 90 > th dose independent rect. 1 3
95 53.12 humidity 80.0 30 > th dose independent rect. 2 1
97 53.14 temperature 10.0 30 > th dose independent rect. 2 1
99 53.14 temperature 30.0 30 < th dose independent rect. 2 1
100 53.14 humidity 50.0 30 > th dose independent rect. 2 1
104 53.14 atmosphere 1010.0 30 < th dose independent rect. 2 1
106 53.14 radiation 1.0 30 < th dose independent rect. 2 1
111 53.14 precipitation 0.1 30 < th dose independent rect. 2 1
112 53.14 temperature 10.0 30 > th dose independent rect. 3 23
113 53.14 humidity 50.0 30 > th dose dependent rect. 2 1
116 53.14 radiation 1.0 30 < th dose dependent rect. 2 1
122 53.14 precipitation 0.1 30 < th dose dependent rect. 2 1
130 53.26 atmosphere 1015.0 30 < th dose dependent rect. 2 1
136 53.32 temperature 30.0 30 < th dose dependent rect. 2 1
137 53.33 wind 1.0 30 > th dose independent rect. 2 1
148 53.46 precipitation 0.1 30 < th dose independent rect. 3 23
149 53.46 precipitation 0.1 30 < th dose dependent rect. 3 23
195 53.69 humidity 60.0 10 < th dose independent rect. 18 1
216 53.93 wind 9.0 30 < th dose independent rect. 3 23
227 54.14 humidity 50.0 30 > th dose independent rect. 3 23
238 54.33 atmosphere 1005.0 30 > th dose dependent rect. 2 6
251 54.36 humidity 90.0 90 < th dose independent rect. 2 1
259 54.43 temperature 30.0 30 < th dose independent rect. 3 23
260 54.44 humidity 90.0 90 < th dose independent rect. 2 3
262 54.44 radiation 1.0 30 > th dose dependent rect. 18 1
329 54.73 humidity 60.0 30 < th dose dependent rect. 18 17
333 54.76 humidity 60.0 30 < th dose dependent rect. 18 1
360 54.91 temperature 30.0 10 > th dose dependent rect. 18 1
382 54.99 humidity 90.0 90 < th dose independent rect. 1 6
385 55.03 humidity 60.0 10 > th dose independent rect. 16 10
394 55.09 humidity 60.0 10 > th dose independent rect. 14 12
401 55.12 temperature 30.0 10 < th dose independent rect. 16 10
402 55.12 humidity 90.0 90 < th dose dependent rect. 2 5
453 55.33 humidity 50.0 30 > th dose dependent rect. 3 23
460 55.35 temperature 30.0 270 < th dose independent rect. 10 11
463 55.36 humidity 90.0 720 < th dose independent rect. 1 3
464 55.36 atmosphere 1000.0 30 > th dose independent rect. 8 18
465 55.37 temperature 25.0 1440 < th dose independent rect. 1 1
475 55.42 atmosphere 995.0 720 > th dose independent rect. 7 8
482 55.44 humidity 90.0 90 < th dose dependent rect. 2 1
487 55.45 wind 1.0 14400 < th dose dependent rect. 2 1
489 55.46 temperature 30.0 10 < th dose independent rect. 14 12
506 55.47 atmosphere 1015.0 30 < th dose independent rect. 3 23
517 55.49 wind 3.0 30 < th dose dependent rect. 2 6
521 55.50 atmosphere 995.0 720 > th dose independent rect. 15 16
522 55.50 temperature 30.0 30 < th dose independent rect. 8 18
536 55.53 atmosphere 995.0 720 > th dose independent rect. 3 16
552 55.55 humidity 80.0 14400 < th dose dependent rect. 3 6
555 55.56 precipitation 0.1 720 < th dose independent rect. 19 8
557 55.56 precipitation 0.1 720 < th dose dependent rect. 19 8
558 55.57 wind 1.0 14400 < th dose independent rect. 2 1
561 55.57 precipitation 0.1 720 < th dose independent rect. 15 16
565 55.57 humidity 80.0 14400 < th dose dependent rect. 23 11
568 55.57 precipitation 0.1 720 < th dose dependent rect. 15 16
573 55.59 wind 9.0 720 < th dose independent rect. 19 8
578 55.59 humidity 90.0 90 < th dose dependent rect. 2 3
581 55.60 humidity 60.0 10 < th dose independent sin 12 NA
582 55.60 precipitation 0.1 720 < th dose independent rect. 7 8
587 55.60 temperature 25.0 720 > th dose dependent rect. 3 6
589 55.60 precipitation 0.1 720 < th dose dependent rect. 7 8
592 55.61 humidity 90.0 10 < th dose dependent rect. 3 2
598 55.62 temperature 25.0 720 > th dose dependent rect. 5 4
609 55.63 temperature 25.0 720 > th dose dependent rect. 6 2
614 55.64 temperature 10.0 720 > th dose independent rect. 7 8
615 55.64 atmosphere 1015.0 720 < th dose independent rect. 7 8
616 55.64 temperature 10.0 720 > th dose independent rect. 15 16
624 55.65 humidity 70.0 14400 > th dose independent rect. 8 2
636 55.65 atmosphere 995.0 720 > th dose independent rect. 23 16
639 55.66 humidity 90.0 720 > th dose independent rect. 3 1
640 55.66 humidity 70.0 14400 < th dose independent rect. 8 2
642 55.66 atmosphere 1005.0 30 > th dose independent rect. 2 6
643 55.66 atmosphere 1000.0 720 > th dose independent rect. 3 8
656 55.67 humidity 80.0 720 > th dose dependent rect. 3 1
660 55.67 radiation 10.0 30 < th dose dependent rect. 3 23
664 55.68 wind 5.0 30 < th dose independent rect. 2 6
693 55.70 wind 1.0 14400 > th dose independent rect. 2 1
698 55.70 radiation 1.0 10 < th dose independent rect. 16 10
709 55.71 humidity 90.0 720 < th dose independent rect. 24 16
714 55.72 temperature 10.0 720 > th dose independent rect. 19 8
715 55.72 temperature 30.0 720 < th dose independent rect. 19 8
716 55.72 humidity 50.0 720 > th dose independent rect. 19 8
717 55.72 atmosphere 995.0 720 > th dose independent rect. 19 8
718 55.72 radiation 1.0 720 < th dose independent rect. 19 8
723 55.72 temperature 10.0 720 > th dose independent rect. 3 16
724 55.72 humidity 90.0 720 < th dose independent rect. 24 18
727 55.72 radiation 1.0 720 < th dose dependent rect. 19 8
734 55.73 radiation 30.0 270 > th dose independent rect. 14 19
748 55.74 humidity 70.0 4320 > th dose independent rect. 10 2
752 55.74 radiation 20.0 10 < th dose dependent rect. 16 10
753 55.74 radiation 10.0 10 > th dose dependent rect. 15 17
756 55.75 wind 9.0 4320 < th dose independent rect. 3 6
757 55.75 atmosphere 1000.0 10 > th dose independent rect. 16 10
768 55.76 temperature 30.0 10 > th dose independent rect. 15 4
774 55.76 precipitation 0.1 720 < th dose independent rect. 15 8
790 55.76 precipitation 0.1 720 < th dose dependent rect. 15 8
793 55.77 humidity 60.0 10 > th dose independent sin 12 NA
797 55.77 humidity 70.0 4320 < th dose independent rect. 10 2
799 55.77 temperature 30.0 720 < th dose independent rect. 9 5
802 55.77 temperature 30.0 720 < th dose independent rect. 2 19
803 55.77 temperature 30.0 720 < th dose independent rect. 1 21
812 55.77 humidity 50.0 30 > th dose dependent rect. 16 10
818 55.78 temperature 15.0 30 > th dose independent rect. 8 18
827 55.79 humidity 90.0 720 < th dose independent rect. 24 14
839 55.79 humidity 80.0 30 < th dose dependent rect. 15 17
840 55.79 radiation 10.0 30 < th dose dependent rect. 5 21
841 55.79 atmosphere 995.0 30 > th dose dependent rect. 3 23
861 55.80 radiation 1.0 10 < th dose independent rect. 6 20
869 55.80 radiation 30.0 30 > th dose dependent rect. 15 17
881 55.82 wind 9.0 720 < th dose independent rect. 15 16
890 55.82 radiation 20.0 10 < th dose dependent rect. 14 12
892 55.82 radiation 10.0 10 < th dose dependent rect. 11 15
899 55.83 humidity 70.0 4320 > th dose independent rect. 10 5
927 55.83 temperature 25.0 30 > th dose dependent rect. 16 19
935 55.84 temperature 10.0 1440 > th dose independent rect. 17 10
938 55.84 radiation 30.0 1440 < th dose independent rect. 17 10
947 55.84 temperature 10.0 1440 > th dose independent rect. 3 14
961 55.85 temperature 30.0 10 > th dose independent rect. 18 1
985 55.85 humidity 50.0 30 > th dose independent rect. 8 18
987 55.85 humidity 70.0 10 < th dose independent rect. 15 19
989 55.85 humidity 80.0 14400 < th dose dependent sin 8 NA