BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0188500 Os12g0188500|Os12g0188500
(602 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G13690.1 | chr2:5706704-5708895 REVERSE LENGTH=545 289 3e-78
AT1G63850.1 | chr1:23696962-23698708 FORWARD LENGTH=549 213 2e-55
AT5G60050.1 | chr5:24183680-24185264 REVERSE LENGTH=500 203 2e-52
AT3G50780.1 | chr3:18875662-18877341 REVERSE LENGTH=521 165 5e-41
AT3G05675.2 | chr3:1658425-1659859 REVERSE LENGTH=442 54 3e-07
>AT2G13690.1 | chr2:5706704-5708895 REVERSE LENGTH=545
Length = 544
Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 202/304 (66%), Gaps = 6/304 (1%)
Query: 209 GVARAIAVLEVSFSLMFDRGVTNCLKYLEAVPWSEPEEERIKSLLSQYPCNKTVSQDLLA 268
GV RAI VLEV+ + F R V +CLKYLEAVPW+E EEE+++ LL Y + ++LA
Sbjct: 231 GVYRAIDVLEVAAGIKFSRAVLSCLKYLEAVPWTEDEEEKLRRLLGIYSFDDDAVSEILA 290
Query: 269 RLQPQEPSSSAE-LVVELMDSITKGTNNNARKDLRTLVDGILSRTSIYIKSDKELDMMNI 327
R E + + L +L+ SIT ++ N R +L++LV G+L ++S+Y K E++ +I
Sbjct: 291 RFNSNETENLQDSLSKKLVWSITSCSDVNPRNELKSLVKGLLCKSSVYEKEQPEINKEDI 350
Query: 328 YSICHTCLNCLVELFGEASDLGPSGQTTISVGKGPHERICKQVENLTWLLQILIDRQMGE 387
Y C++ L +LF E S S + + E I ++VEN+ WLL+I+IDR++ E
Sbjct: 351 YRAGKCCVDSLAKLFEEGSSSSSSKKEKPLI-----ESISREVENINWLLEIMIDREIAE 405
Query: 388 EFVDLWASQNTLSTMHERFSPMVRYELSRISATIFIAMGSGKLHCTSTSRLGIFEAWFRP 447
EFV++W Q L MHER SPMVRYE+SR++ IFIAMG ++ C +R G+ EAWF+P
Sbjct: 406 EFVEIWGKQRRLVEMHERVSPMVRYEVSRVTGAIFIAMGKRRVQCGGEARAGLVEAWFKP 465
Query: 448 LLVDFGWLRRCPKGLNMATLEDGIGQALLTLTLKHQQVLFMEWFETFSGQGRECPNLMRA 507
+LVDFGWL+RC KGL+M +E+G+GQ LLTL +K Q +FMEWF FS G ECPNL +A
Sbjct: 466 MLVDFGWLQRCKKGLDMREVEEGMGQTLLTLPVKEQYQVFMEWFRWFSKHGTECPNLSKA 525
Query: 508 FQVF 511
FQ++
Sbjct: 526 FQIW 529
>AT1G63850.1 | chr1:23696962-23698708 FORWARD LENGTH=549
Length = 548
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 177/315 (56%), Gaps = 26/315 (8%)
Query: 207 RAGVARAIAVLEVSFSLMFDRGVTNCLKYLEAVPWSEPEEERIKSLLSQYPCNKTVSQDL 266
R V+R + +L+VS ++ FD GV +CL+YLEA PWSE EE RI SLLS+ + ++
Sbjct: 222 RHDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWSEDEEYRIASLLSELHLENVGATEV 281
Query: 267 LARLQPQEPSSSA--------ELVVELMDSITKGTNNNARKDLRTLVDGILSRTSIYIKS 318
L R+ + + + E+++ L+ + +G + AR+D++TLV +L S S
Sbjct: 282 LRRVSVEASNGNNGSNGGSNDEVLLNLLHIVLEGKDEKARRDMKTLVSKMLRENS----S 337
Query: 319 DKELDMMNIYSICHTCLNCLVELFGEA--SDLGPSGQTTISVGKGPHERICKQVENLTWL 376
+L ++Y C CL+ L F +A SDL Q I +Q +NL W+
Sbjct: 338 GNDLRKESLYLACDGCLHKLKRQFLQAAESDLENVDQ------------IARQADNLHWI 385
Query: 377 LQILIDRQMGEEFVDLWASQNTLSTMHERFSPMVRYELSRISATIFIAMGSGKLHCTSTS 436
L ILIDRQ+ E+F+ +WAS + LS +H + + R+E+SR++A IF+ +G G++
Sbjct: 386 LDILIDRQIAEDFIVMWASLSELSEVHSKVPVVHRFEISRVTARIFVGIGKGQILTPKEV 445
Query: 437 RLGIFEAWFRPLLVDFGWLRRCPKGLNMATLEDGIGQALLTLTLKHQQVLFMEWFETFSG 496
R + W P DFGW+RR KGL+ +EDG+ +LTL L QQ F+ WF+ F
Sbjct: 446 RCLLLRNWLTPFYDDFGWMRRASKGLDRYLIEDGLSNTILTLPLAWQQEFFLAWFDRFLN 505
Query: 497 QGRECPNLMRAFQVF 511
+CPN+ R F+V+
Sbjct: 506 SNEDCPNIQRGFEVW 520
>AT5G60050.1 | chr5:24183680-24185264 REVERSE LENGTH=500
Length = 499
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 179/313 (57%), Gaps = 22/313 (7%)
Query: 209 GVARAIAVLEVSFSLMFDRGVTNCLKYLEAVPWSEPEEERIKSLLSQYPCNKTVSQDLLA 268
V + +A+L+VS ++ FD GV +CL++LEAVPWSE EEE + + L + +L
Sbjct: 176 NVIKILALLKVSAAISFDEGVMSCLEHLEAVPWSEDEEETVVTCLEELHLPDDSVTLILQ 235
Query: 269 RLQPQEPSSSA-----ELVVELMDSITKGTNNNARKDLRTLVDGILSRTSIYIKSDKELD 323
R+ Q +SS ++ +L+ + + ++ AR++++ L+ ++ ++D ++
Sbjct: 236 RVSSQPSTSSTRTRTDDIFSKLLTGVLQAKDDKARREMKVLIFKLVRE-----EADYDVS 290
Query: 324 MMNIYSICHTCLN----CLVELFGEASDLGPSGQTTISVGKGPHERICKQVENLTWLLQI 379
+Y +CH CL CL E+ + +D G + I ++ +N+ W++ I
Sbjct: 291 RDTLYGLCHRCLTSLVLCLSEVTTQMNDPGKDRGALMG-------EIAREADNMLWMVDI 343
Query: 380 LIDRQMGEEFVDLWASQNTLSTMHERFSPMVRYELSRISATIFIAMGSGKLHCTSTSRLG 439
LI++++ EFV LWA Q L+ +H + M R+E+S+I+A I + +G G++ +R
Sbjct: 344 LIEKKLCSEFVKLWADQKELANLHSKIPTMYRHEISKITAQICVGIGKGRILVNRETRFA 403
Query: 440 IFEAWFRPLLVDFGWLRR-CPKGLNMATLEDGIGQALLTLTLKHQQVLFMEWFETFSGQG 498
+ W L DFGW+RR + L+ +EDG+ Q +LTL+L+ QQV+ M+WF+ F +G
Sbjct: 404 VLNTWLEALYDDFGWMRRLSSRSLDRKLVEDGLSQTILTLSLRQQQVILMKWFDRFLSKG 463
Query: 499 RECPNLMRAFQVF 511
+CPN+ RAF+V+
Sbjct: 464 DDCPNVQRAFEVW 476
>AT3G50780.1 | chr3:18875662-18877341 REVERSE LENGTH=521
Length = 520
Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 170/309 (55%), Gaps = 17/309 (5%)
Query: 207 RAGVARAIAVLEVSFSLMFDRGVTNCLKYLEAVPW-SEPEEERIKSLLSQYPCNKTVSQD 265
+ V+R + VL+V+ L F + +CL YLEAVPW E EEE++ S + +
Sbjct: 198 KQNVSRVLRVLKVAELLGFSSCIQSCLDYLEAVPWVGEEEEEKVISSILRLKTEGVGVTP 257
Query: 266 LLARLQPQEPSSSAELVVELMDSITKGTNNNARKDLRTLVDGILSRTSIYIKSDKELDMM 325
+L R+ E + +++ + + +R++++++V +L + +D D
Sbjct: 258 VLKRVASNAVDPPKETLSRIIELVLRSKEEKSRREMKSIVLKLLREQNGANVADNFND-- 315
Query: 326 NIYSICHTCLNCLVELFGEASDLGPSGQTTISVGKGPH---ERICKQVENLTWLLQILID 382
IYS C TCL+ ++ LF +AS+ G+ P ++I + +NLTWLL +L +
Sbjct: 316 TIYSSCQTCLDSVLSLFKQASE-----------GEKPETDTKQIAVEADNLTWLLDVLAE 364
Query: 383 RQMGEEFVDLWASQNTLSTMHERFSPMVRYELSRISATIFIAMGSGKLHCTSTSRLGIFE 442
RQ EEF WA+Q L+ +HE+ M RY +SR+++ +FI +G G+L + +RL +
Sbjct: 365 RQAAEEFSVTWANQKELALLHEKLPLMSRYHISRVTSRLFIGIGRGELLPSKDTRLLLLT 424
Query: 443 AWFRPLLVDFGWLRRCPKGLNMATLEDGIGQALLTLTLKHQQVLFMEWFETFSGQGRECP 502
W +PL D+ WL+ + + +E+GIG+ +LTL L+ QQ + + W +F G CP
Sbjct: 425 TWLQPLFNDYNWLQHGCRSFDGKLVEEGIGRTILTLPLEDQQSILLSWLGSFLNGGDGCP 484
Query: 503 NLMRAFQVF 511
NL RAF+V+
Sbjct: 485 NLQRAFEVW 493
>AT3G05675.2 | chr3:1658425-1659859 REVERSE LENGTH=442
Length = 441
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 140/331 (42%), Gaps = 44/331 (13%)
Query: 209 GVARAIAVLEVSFSLMFDRGVTNCLKYLEAVPWSEPEEERIKSLLSQYPCNKTVSQDLLA 268
V A+ +L V+ L + VT C+ YLEAVPW E EEE I L P + ++ +LA
Sbjct: 104 NVKSALGILSVAKELSCPQIVTACVNYLEAVPWEEGEEEEI---LRIVPRIGSEAEPILA 160
Query: 269 RLQPQEPSSSAELVVELMDSITKG-------TNNNARKDLRTLVDGILSRTSIYIKSDKE 321
RLQP + S+ E+ V T ++A++ + ++ + + +
Sbjct: 161 RLQPVDQSAVLEIFVSAFRFATSSPPLLLGDIKSSAQEQIEYMITEDDDAPLLIADEEVK 220
Query: 322 LDMMN-IYSICHTCLNCLVELFGEASDLGPSGQTTISVGKGPHERICKQVENLTWLLQIL 380
L++ + S+ CL E+ L P I+ KG + + ++ W+ QIL
Sbjct: 221 LEVKQCVKSLFVRFFQCLEEI-----TLKPVESEVIN-KKGSFRMV---LSDMCWVFQIL 271
Query: 381 IDRQMGEEFVDLWA--SQNTLSTMHERFSPMV-----RYELSRISATIFIAMGSGKLHCT 433
++ +FV WA S+ + + + + +V R ++ ++A + A+G G +
Sbjct: 272 TKMEVVRDFVITWADISEKLVKVVEQLETTVVEAVEIRVKVIEVTAKVIEAIGYGTVILP 331
Query: 434 STSRLGIFEAWF------RPLL-------VDFGWLRRCPKGLNMATLEDGIGQALLTLTL 480
+ RL + + W +PL+ + +R G LE +L L
Sbjct: 332 TAKRLQMVKLWLPFVRNTKPLVDSPVREDEENDTVRYKIDGEIWQALESSFVSIILALPS 391
Query: 481 KHQQVLFMEWFETFSGQGRECPNLMRAFQVF 511
Q + EW S G P+L AF+V+
Sbjct: 392 ADQAEILTEW---LSKNGL-YPDLTEAFEVW 418
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,934,013
Number of extensions: 316100
Number of successful extensions: 744
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 733
Number of HSP's successfully gapped: 5
Length of query: 602
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 498
Effective length of database: 8,255,305
Effective search space: 4111141890
Effective search space used: 4111141890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)