Os04g0579700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Predicted protein.
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Os04g0579700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Predicted protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.68 | 0.387 | 8.65 | -0.0608 | 0.191 | 1.41 | -0.955 | 1.49 | -0.0942 | 6.58 | 14.99 | 2791 | -- | -- |
| 69.24 | 0.388 | 8.7 | -0.394 | 0.21 | 1.31 | -0.866 | -- | -0.185 | 6.92 | 17.4 | 2748 | -- | -- |
| 69.88 | 0.389 | 8.65 | -0.0784 | 0.201 | 1.41 | -- | 1.41 | -0.093 | 7.45 | 15.12 | 2685 | -- | -- |
| 71.22 | 0.393 | 8.7 | -0.422 | 0.206 | 1.31 | -- | -- | -0.192 | 7.47 | 17.39 | 2677 | -- | -- |
| 71.79 | 0.395 | 8.65 | -0.1 | -- | 1.43 | -- | 1.4 | -0.0971 | -- | 14.76 | 2778 | -- | -- |
| 111.17 | 0.494 | 8.63 | 0.131 | 0.259 | -- | -0.853 | -- | 0.0963 | 5.88 | -- | -- | -- | -- |
| 112.81 | 0.497 | 8.63 | 0.123 | 0.259 | -- | -- | -- | 0.099 | 5.17 | -- | -- | -- | -- |
| 73.23 | 0.399 | 8.7 | -0.429 | -- | 1.31 | -- | -- | -0.188 | -- | 17.3 | 2770 | -- | -- |
| 74.6 | 0.402 | 8.68 | -- | 0.367 | 1.1 | -- | -- | -0.119 | 6.55 | 21.18 | 2015 | -- | -- |
| 116.31 | 0.504 | 8.64 | 0.132 | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
| 113.21 | 0.498 | 8.64 | -- | 0.261 | -- | -- | -- | 0.0853 | 5.16 | -- | -- | -- | -- |
| 76.44 | 0.407 | 8.68 | -- | -- | 1.02 | -- | -- | -0.0919 | -- | 21.47 | 2760 | -- | -- |
| 116.77 | 0.504 | 8.64 | -- | -- | -- | -- | -- | 0.0908 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 3 | 68.19 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 4 | 68.27 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 14 | 68.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 15 | 68.32 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 19 | 68.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 22 | 68.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 24 | 68.81 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 25 | 68.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 36 | 68.87 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 43 | 68.92 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 55 | 68.98 | radiation | 30 | 4320 | < th | dose dependent | rect. | 16 | 15 |
| 61 | 69.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 62 | 69.03 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 83 | 69.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 86 | 69.15 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 87 | 69.15 | radiation | 1 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 92 | 69.16 | radiation | 1 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 93 | 69.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 96 | 69.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 97 | 69.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 98 | 69.20 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 104 | 69.21 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 109 | 69.26 | radiation | 1 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 115 | 69.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 116 | 69.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 120 | 69.38 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 136 | 69.46 | radiation | 1 | 4320 | < th | dose dependent | rect. | 22 | 8 |
| 141 | 69.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 143 | 69.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 155 | 69.53 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 8 |
| 178 | 69.60 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 12 |
| 215 | 69.72 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 218 | 69.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 219 | 69.72 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 230 | 69.73 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 235 | 69.73 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 9 |
| 245 | 69.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 253 | 69.76 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 14 |
| 255 | 69.77 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 7 |
| 258 | 69.77 | temperature | 10 | 4320 | > th | dose dependent | rect. | 15 | 20 |
| 263 | 69.79 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 268 | 69.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 9 |
| 276 | 69.80 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 14 |
| 279 | 69.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 17 |
| 292 | 69.81 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 19 |
| 364 | 69.88 | temperature | 15 | 4320 | > th | dose dependent | sin | 7 | NA |
| 379 | 69.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 381 | 69.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 383 | 69.89 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 394 | 69.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 13 |
| 415 | 69.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 10 |
| 607 | 69.99 | humidity | 90 | 43200 | > th | dose dependent | sin | 1 | NA |
| 608 | 69.99 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 626 | 70.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 638 | 70.01 | humidity | 90 | 43200 | > th | dose independent | sin | 3 | NA |
| 654 | 70.01 | temperature | 30 | 4320 | < th | dose dependent | sin | 7 | NA |
| 730 | 70.05 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 21 |
| 752 | 70.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 16 |
| 874 | 70.13 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 23 |
| 878 | 70.14 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 928 | 70.16 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |