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Os04g0278000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to PRLI-interacting factor G (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.58 (0.0177) R2 : 0.922
β1 : 1.58 (0.0648) R2dD : 0.106 R2D : -0.287
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 2.75 (0.0378) R2dN8 : 1.21 R2N8 : 0.817
σ : 0.332
deviance : 50.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.93 0.289 9.62 1.23 0.176 -0.844 -0.274 -0.348 2.56 23 25.3 4570 -- --
38.04 0.287 9.63 1.18 0.176 -0.787 -0.238 -- 2.56 23.1 25.7 4562 -- --
38.24 0.288 9.62 1.24 0.177 -0.843 -- -0.345 2.56 22.8 25.3 4562 -- --
38.35 0.288 9.63 1.18 0.179 -0.79 -- -- 2.55 22.8 25.7 4536 -- --
39.76 0.294 9.62 1.24 -- -0.8 -- -0.105 2.56 -- 27.16 3709 -- --
47.97 0.325 9.59 1.57 0.186 -- -0.264 -- 2.75 23.3 -- -- -- --
48.27 0.325 9.58 1.58 0.188 -- -- -- 2.75 23.2 -- -- -- --
39.76 0.294 9.62 1.23 -- -0.786 -- -- 2.56 -- 27.61 3658 -- --
43.43 0.307 9.7 -- 0.185 -1.36 -- -- 2.24 23.4 22.37 47520 -- --
50.47 0.332 9.58 1.58 -- -- -- -- 2.75 -- -- -- -- --
114.02 0.5 9.62 -- 0.204 -- -- -- 2.57 23.7 -- -- -- --
45.13 0.313 9.7 -- -- -1.39 -- -- 2.23 -- 22.5 47520 -- --
116.65 0.504 9.62 -- -- -- -- -- 2.57 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 35.39 temperature 25 720 > th dose independent rect. 17 9
4 35.57 temperature 25 720 > th dose independent rect. 15 11
6 35.63 temperature 25 720 > th dose independent sin 14 NA
8 35.74 temperature 25 720 < th dose independent rect. 16 10
15 35.82 temperature 25 720 < th dose independent sin 14 NA
17 35.83 temperature 25 720 < th dose independent rect. 15 13
39 36.25 temperature 25 1440 > th dose dependent rect. 22 2
51 36.39 temperature 25 720 > th dose independent rect. 15 17
65 36.57 temperature 25 720 > th dose independent rect. 20 5
77 36.69 temperature 25 1440 > th dose independent rect. 22 2
79 36.72 temperature 25 720 > th dose dependent rect. 20 6
80 36.72 temperature 20 720 > th dose dependent rect. 17 10
110 36.86 temperature 25 720 < th dose independent rect. 11 17
112 36.86 temperature 10 720 > th dose dependent rect. 15 14
117 36.88 temperature 20 720 > th dose dependent rect. 17 8
120 36.92 temperature 25 720 < th dose independent rect. 11 15
127 36.96 temperature 10 720 > th dose dependent rect. 17 8
139 37.05 temperature 25 1440 < th dose independent rect. 22 3
151 37.10 temperature 10 720 > th dose dependent rect. 13 16
153 37.12 temperature 25 720 > th dose independent rect. 11 16
156 37.14 temperature 25 720 > th dose independent rect. 11 18
164 37.17 temperature 20 720 > th dose dependent rect. 15 12
195 37.32 temperature 20 720 > th dose dependent sin 14 NA
207 37.38 temperature 25 720 > th dose dependent rect. 18 14
223 37.43 temperature 20 270 > th dose dependent sin 11 NA
242 37.47 temperature 30 30 < th dose dependent rect. 5 23
253 37.50 temperature 30 720 < th dose dependent rect. 16 12
274 37.57 temperature 25 4320 > th dose independent rect. 17 1
281 37.57 temperature 15 30 > th dose dependent rect. 13 23
327 37.71 temperature 30 720 < th dose dependent sin 14 NA
347 37.77 temperature 10 720 > th dose dependent rect. 11 18
354 37.79 temperature 30 4320 < th dose dependent rect. 4 1
381 37.84 temperature 30 270 < th dose dependent sin 10 NA
382 37.84 temperature 10 4320 > th dose dependent rect. 4 1
383 37.84 temperature 25 4320 < th dose dependent rect. 4 8
397 37.87 temperature 25 4320 < th dose dependent sin 2 NA
399 37.87 temperature 25 4320 < th dose dependent rect. 7 1
416 37.88 temperature 25 4320 < th dose dependent rect. 4 14
418 37.88 temperature 25 4320 < th dose dependent rect. 2 16
446 37.91 temperature 25 4320 < th dose independent rect. 17 1
513 37.96 temperature 30 270 < th dose dependent rect. 17 16
554 38.00 temperature 25 4320 < th dose dependent rect. 7 22
588 38.02 temperature 25 4320 < th dose dependent rect. 7 20
629 38.05 temperature 25 4320 < th dose dependent no NA NA
643 38.05 temperature 25 4320 < th dose dependent rect. 13 23
666 38.07 temperature 25 4320 > th dose independent rect. 15 10
762 38.12 temperature 10 720 > th dose dependent rect. 11 16
790 38.15 temperature 25 4320 < th dose independent rect. 13 12
794 38.15 temperature 25 4320 < th dose independent rect. 11 14
815 38.16 humidity 80 4320 < th dose dependent rect. 22 1
843 38.18 temperature 25 4320 > th dose independent rect. 11 18
864 38.20 temperature 25 4320 > th dose independent sin 16 NA
878 38.20 temperature 25 270 < th dose dependent rect. 10 23
915 38.22 temperature 15 30 > th dose dependent rect. 2 23
917 38.22 temperature 25 270 < th dose dependent rect. 21 23
924 38.23 temperature 25 4320 < th dose independent rect. 11 18
942 38.24 temperature 30 4320 < th dose dependent rect. 24 5
955 38.25 temperature 25 4320 < th dose independent rect. 8 18
959 38.25 temperature 30 4320 < th dose dependent rect. 24 1
961 38.25 temperature 10 4320 > th dose dependent rect. 24 5
987 38.27 temperature 25 4320 < th dose independent sin 16 NA