BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0278000 Os04g0278000|AK120988
(527 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G13690.1 | chr2:5706704-5708895 REVERSE LENGTH=545 327 1e-89
AT1G63850.1 | chr1:23696962-23698708 FORWARD LENGTH=549 220 2e-57
AT5G60050.1 | chr5:24183680-24185264 REVERSE LENGTH=500 212 4e-55
AT3G50780.1 | chr3:18875662-18877341 REVERSE LENGTH=521 167 1e-41
>AT2G13690.1 | chr2:5706704-5708895 REVERSE LENGTH=545
Length = 544
Score = 327 bits (838), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 197/527 (37%), Positives = 275/527 (52%), Gaps = 37/527 (7%)
Query: 18 RGWCCSFSATPQSPDHHRPLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRL 77
R WCCSF+ P SPD R +S +
Sbjct: 23 RSWCCSFAVPPASPDT-RSISSRNHIPAKSQQQRPKLVPCSPQSSKSAL---------NI 72
Query: 78 AGFIDPRRILSPGRVSPIDPDGSPAVAAGANSE------EDATPRPSVPFV-------AV 124
IDPRRILSPGRVSPID D P V +E +DA S P +
Sbjct: 73 VNRIDPRRILSPGRVSPIDSD--PTVTTMQETETTQEEEDDAVVVDSTPNLRSESFRAPK 130
Query: 125 XXXXXXXXXXXLDLKLCLRGRDG--------RSVAMELDSAVLCXXXXXXXXXXXXXXXT 176
D +L L+GR+G + +S V
Sbjct: 131 IEVTGSGLSEGYDARLSLKGRNGGGVLVLELSLEVLAANSDVFSGLIAEEKKCSSSSSSL 190
Query: 177 VGGGSKRIEVDGVENVEAFKETVELMFEADP--MRWFVRAGVSRAIGVLEVSSSIMFDRG 234
+ RIEV VEN+ F+ETVELMFE ++ F+ GV RAI VLEV++ I F R
Sbjct: 191 GLKNTCRIEVCDVENLGVFRETVELMFEESNVIIKKFMTMGVYRAIDVLEVAAGIKFSRA 250
Query: 235 IKSCLEYIEAVPWXXXXXXXXXXXFARCTFDEAVSKDVLARLKP-QCQSISDDVTVHLIQ 293
+ SCL+Y+EAVPW +FD+ ++LAR + +++ D ++ L+
Sbjct: 251 VLSCLKYLEAVPWTEDEEEKLRRLLGIYSFDDDAVSEILARFNSNETENLQDSLSKKLVW 310
Query: 294 SVTSSTNTGARKEMQSLVNGLLSRSSVYQKDLSGLNKGSLYQICCSCLNSLVEHFTEDLC 353
S+TS ++ R E++SLV GLL +SSVY+K+ +NK +Y+ C++SL + F E
Sbjct: 311 SITSCSDVNPRNELKSLVKGLLCKSSVYEKEQPEINKEDIYRAGKCCVDSLAKLFEEGS- 369
Query: 354 SDKIVRDSKPMIERVSKQTENLNWLFDILVNNDMAEEFVELWAKQEDLISMHGQASAMFR 413
S + KP+IE +S++ EN+NWL +I+++ ++AEEFVE+W KQ L+ MH + S M R
Sbjct: 370 SSSSSKKEKPLIESISREVENINWLLEIMIDREIAEEFVEIWGKQRRLVEMHERVSPMVR 429
Query: 414 YELSRISANVFIVLGKGKVQCPSDLRSQLFYGWFRPMLMDFGWLQRCSKGLDMRMLEENX 473
YE+SR++ +FI +GK +VQC + R+ L WF+PML+DFGWLQRC KGLDMR +EE
Sbjct: 430 YEVSRVTGAIFIAMGKRRVQCGGEARAGLVEAWFKPMLVDFGWLQRCKKGLDMREVEEGM 489
Query: 474 XXXXXXXXXXXXXXXFEEWFQCFASRGTECPNLSRAFQVWWRRSFVR 520
F EWF+ F+ GTECPNLS+AFQ+WWRRSF+R
Sbjct: 490 GQTLLTLPVKEQYQVFMEWFRWFSKHGTECPNLSKAFQIWWRRSFLR 536
>AT1G63850.1 | chr1:23696962-23698708 FORWARD LENGTH=549
Length = 548
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/404 (30%), Positives = 207/404 (51%), Gaps = 26/404 (6%)
Query: 137 DLKLCLRGRDGRSVAMELDSAVLCXXXXXXXXXXX----XXXXTVGGGSKRIEVDGVENV 192
D+KL L +DG S+ M + +L +E+ ++V
Sbjct: 142 DVKLTLSSKDGISITMCVHRQILVAHSRFFAMKLSDRWSKQQLPPSSSPYIVEISDCDDV 201
Query: 193 EAFKETVELMFEADPMRWFVRAGVSRAIGVLEVSSSIMFDRGIKSCLEYIEAVPWXXXXX 252
E + ET+ LM+ D + +R VSR +G+L+VS++I FD G+ SCLEY+EA PW
Sbjct: 202 EVYIETLMLMYCRDLRKKMMRHDVSRVLGILKVSAAIGFDAGVLSCLEYLEAAPWSEDEE 261
Query: 253 XXXXXXFARCTFDEAVSKDVLARLKPQCQSIS--------DDVTVHLIQSVTSSTNTGAR 304
+ + + +VL R+ + + + D+V ++L+ V + AR
Sbjct: 262 YRIASLLSELHLENVGATEVLRRVSVEASNGNNGSNGGSNDEVLLNLLHIVLEGKDEKAR 321
Query: 305 KEMQSLVNGLLSRSSVYQKDLSG--LNKGSLYQICCSCLNSLVEHFTEDLCSDKIVRDSK 362
++M++LV+ +L +S SG L K SLY C CL+ L F + SD
Sbjct: 322 RDMKTLVSKMLRENS------SGNDLRKESLYLACDGCLHKLKRQFLQAAESDL------ 369
Query: 363 PMIERVSKQTENLNWLFDILVNNDMAEEFVELWAKQEDLISMHGQASAMFRYELSRISAN 422
++++++Q +NL+W+ DIL++ +AE+F+ +WA +L +H + + R+E+SR++A
Sbjct: 370 ENVDQIARQADNLHWILDILIDRQIAEDFIVMWASLSELSEVHSKVPVVHRFEISRVTAR 429
Query: 423 VFIVLGKGKVQCPSDLRSQLFYGWFRPMLMDFGWLQRCSKGLDMRMLEENXXXXXXXXXX 482
+F+ +GKG++ P ++R L W P DFGW++R SKGLD ++E+
Sbjct: 430 IFVGIGKGQILTPKEVRCLLLRNWLTPFYDDFGWMRRASKGLDRYLIEDGLSNTILTLPL 489
Query: 483 XXXXXXFEEWFQCFASRGTECPNLSRAFQVWWRRSFVRSSLESR 526
F WF F + +CPN+ R F+VWWRR+F R +S+
Sbjct: 490 AWQQEFFLAWFDRFLNSNEDCPNIQRGFEVWWRRAFWRRKEQSQ 533
>AT5G60050.1 | chr5:24183680-24185264 REVERSE LENGTH=500
Length = 499
Score = 212 bits (539), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 205/400 (51%), Gaps = 26/400 (6%)
Query: 137 DLKLCLRGRDGRSVAMELDSAVLCXXXXXXXXXXXXXXXTVGGGSKRIEVDGVENVEAFK 196
D+KL + G+DG V M++ VL G S +E+ +++E +
Sbjct: 100 DVKLTVVGKDGYRVTMDVHRKVLSEKSRFFMEKMNSRREK--GVSHMVEISECDDLEIYV 157
Query: 197 ETVELMFEADPMRWFVRAGVSRAIGVLEVSSSIMFDRGIKSCLEYIEAVPWXXXXXXXXX 256
ETV LM+ D + + V + + +L+VS++I FD G+ SCLE++EAVPW
Sbjct: 158 ETVVLMYSDDLKKKLIGENVIKILALLKVSAAISFDEGVMSCLEHLEAVPWSEDEEETVV 217
Query: 257 XXFARCTFDEAVSKDVLARLKPQ-----CQSISDDVTVHLIQSVTSSTNTGARKEMQSLV 311
+ +L R+ Q ++ +DD+ L+ V + + AR+EM+ L+
Sbjct: 218 TCLEELHLPDDSVTLILQRVSSQPSTSSTRTRTDDIFSKLLTGVLQAKDDKARREMKVLI 277
Query: 312 NGLLSRSSVYQKDLSGLNKGSLYQICCSCLNSLVEHFTEDLCSDKIV-------RDSKPM 364
L+ + Y +++ +LY +C CL SLV LC ++ +D +
Sbjct: 278 FKLVREEADYD-----VSRDTLYGLCHRCLTSLV------LCLSEVTTQMNDPGKDRGAL 326
Query: 365 IERVSKQTENLNWLFDILVNNDMAEEFVELWAKQEDLISMHGQASAMFRYELSRISANVF 424
+ ++++ +N+ W+ DIL+ + EFV+LWA Q++L ++H + M+R+E+S+I+A +
Sbjct: 327 MGEIAREADNMLWMVDILIEKKLCSEFVKLWADQKELANLHSKIPTMYRHEISKITAQIC 386
Query: 425 IVLGKGKVQCPSDLRSQLFYGWFRPMLMDFGWLQRC-SKGLDMRMLEENXXXXXXXXXXX 483
+ +GKG++ + R + W + DFGW++R S+ LD +++E+
Sbjct: 387 VGIGKGRILVNRETRFAVLNTWLEALYDDFGWMRRLSSRSLDRKLVEDGLSQTILTLSLR 446
Query: 484 XXXXXFEEWFQCFASRGTECPNLSRAFQVWWRRSFVRSSL 523
+WF F S+G +CPN+ RAF+VWWRR+F+R L
Sbjct: 447 QQQVILMKWFDRFLSKGDDCPNVQRAFEVWWRRAFIRQVL 486
>AT3G50780.1 | chr3:18875662-18877341 REVERSE LENGTH=521
Length = 520
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 112/390 (28%), Positives = 183/390 (46%), Gaps = 21/390 (5%)
Query: 137 DLKLCLRGRDGRSVAMELDSAVLCXXXXXXXXXXXXXXXTVGGGSKRIEVDGVENVEAFK 196
D K+ L G+ G V + + VL +E++ E+ E +
Sbjct: 126 DAKVILVGKQGFCVKLSVHKKVLVDHSCFFAKKLAEKDSVFAC----LEIESCEDAELYV 181
Query: 197 ETVELMFEADPMRWFVRAGVSRAIGVLEVSSSIMFDRGIKSCLEYIEAVPWX-XXXXXXX 255
ET+ LM+ D + ++ VSR + VL+V+ + F I+SCL+Y+EAVPW
Sbjct: 182 ETIGLMYCKDMKQRLMKQNVSRVLRVLKVAELLGFSSCIQSCLDYLEAVPWVGEEEEEKV 241
Query: 256 XXXFARCTFDEAVSKDVLARLKPQCQSISDDVTVHLIQSVTSSTNTGARKEMQSLVNGLL 315
R + VL R+ + +I+ V S +R+EM+S+V LL
Sbjct: 242 ISSILRLKTEGVGVTPVLKRVASNAVDPPKETLSRIIELVLRSKEEKSRREMKSIVLKLL 301
Query: 316 SRSSVYQKDLSGLN-----KGSLYQICCSCLNSLVEHFTEDLCSDKIVRDSKPMIERVSK 370
++ +G N ++Y C +CL+S++ F + +K D+K +++
Sbjct: 302 -------REQNGANVADNFNDTIYSSCQTCLDSVLSLFKQASEGEKPETDTK----QIAV 350
Query: 371 QTENLNWLFDILVNNDMAEEFVELWAKQEDLISMHGQASAMFRYELSRISANVFIVLGKG 430
+ +NL WL D+L AEEF WA Q++L +H + M RY +SR+++ +FI +G+G
Sbjct: 351 EADNLTWLLDVLAERQAAEEFSVTWANQKELALLHEKLPLMSRYHISRVTSRLFIGIGRG 410
Query: 431 KVQCPSDLRSQLFYGWFRPMLMDFGWLQRCSKGLDMRMLEENXXXXXXXXXXXXXXXXFE 490
++ D R L W +P+ D+ WLQ + D +++EE
Sbjct: 411 ELLPSKDTRLLLLTTWLQPLFNDYNWLQHGCRSFDGKLVEEGIGRTILTLPLEDQQSILL 470
Query: 491 EWFQCFASRGTECPNLSRAFQVWWRRSFVR 520
W F + G CPNL RAF+VWWRRSF+R
Sbjct: 471 SWLGSFLNGGDGCPNLQRAFEVWWRRSFIR 500
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,015,099
Number of extensions: 314303
Number of successful extensions: 756
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 4
Length of query: 527
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 424
Effective length of database: 8,282,721
Effective search space: 3511873704
Effective search space used: 3511873704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)