BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0569300 Os04g0569300|AK058648
(342 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0569300 Similar to Membrane protein 537 e-153
Os09g0525900 Rhomboid-like protein family protein 298 3e-81
Os08g0546700 Rhomboid-like protein family protein 293 2e-79
Os03g0116400 Similar to Membrane protein 283 2e-76
Os10g0521900 Rhomboid-like protein family protein 270 9e-73
Os11g0704800 Similar to Membrane protein 270 1e-72
Os01g0147300 Rhomboid-like protein family protein 88 9e-18
>Os04g0569300 Similar to Membrane protein
Length = 342
Score = 537 bits (1383), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/342 (79%), Positives = 271/342 (79%)
Query: 1 MSNADVEAGGPAGREATTGIKPPPGRYXXXXXXXXXXXXXXXXXXXXXXXXXQERHHRTW 60
MSNADVEAGGPAGREATTGIKPPPGRY QERHHRTW
Sbjct: 1 MSNADVEAGGPAGREATTGIKPPPGRYNPSGNGPNAVAPAPPPFYYYDQAAAQERHHRTW 60
Query: 61 VVPLXXXXXXXXXXXXXYYNNCPANGGRRDCVGRSFLRRLSFQPLRENPVLGPSAATLRK 120
VVPL YYNNCPANGGRRDCVGRSFLRRLSFQPLRENPVLGPSAATLRK
Sbjct: 61 VVPLVVIANVAMFVVVMYYNNCPANGGRRDCVGRSFLRRLSFQPLRENPVLGPSAATLRK 120
Query: 121 YGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFWKVGLVYLV 180
YGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFWKVGLVYLV
Sbjct: 121 YGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFWKVGLVYLV 180
Query: 181 SGFGGSVLSVLFISRNGITVXXXXXXXXXXXXXXSELITNWTIYSNRCXXXXXXXXXXXX 240
SGFGGSVLSVLFISRNGITV SELITNWTIYSNRC
Sbjct: 181 SGFGGSVLSVLFISRNGITVGASGALFGLLGAMLSELITNWTIYSNRCAAMVNLIIIAAI 240
Query: 241 XXXXXXXPRVDNFAHIGGFATGFLLGFVLLIQPQFGWSEQVSSAKSKYNAFQIILLTLSV 300
PRVDNFAHIGGFATGFLLGFVLLIQPQFGWSEQVSSAKSKYNAFQIILLTLSV
Sbjct: 241 NLALGILPRVDNFAHIGGFATGFLLGFVLLIQPQFGWSEQVSSAKSKYNAFQIILLTLSV 300
Query: 301 ALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCDK 342
ALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCDK
Sbjct: 301 ALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCDK 342
>Os09g0525900 Rhomboid-like protein family protein
Length = 323
Score = 298 bits (764), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 152/293 (51%), Positives = 180/293 (61%), Gaps = 4/293 (1%)
Query: 53 QERHHRTWVVPLXXXXXXXXXXXXXYYNNCPANGGRRDCVGRSFLRRLSFQPLRENPVLG 112
+R W+VP Y NNCP +G FLRR SFQPLRENP+LG
Sbjct: 30 DDRKWWPWLVPTVIVACIAVFIVEMYVNNCPKHGSALGGCVAGFLRRFSFQPLRENPLLG 89
Query: 113 PSAATLRKYGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFW 172
PS+ATL+K GALDW VVH +Q WRL + WLHAGLIHL NM+SLL IGIRLEQQFGF
Sbjct: 90 PSSATLQKMGALDWNKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFV 149
Query: 173 KVGLVYLVSGFGGSVLSVLFISRNGITVXXXXXXXXXXXXXXSELITNWTIYSNRCXXXX 232
++G +YL+SGFGGSVLS LF+ N I+V SELI NWTIYSN+
Sbjct: 150 RIGAIYLLSGFGGSVLSALFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAAII 209
Query: 233 XXXXXXXXXXXXXXXPRVDNFAHIGGFATGFLLGFVLLIQPQFGWSEQ----VSSAKSKY 288
P DNFAHIGGF TGFLLGFVLL +PQFGW E+ ++ KY
Sbjct: 210 TLLFIIAINLAIGILPHADNFAHIGGFVTGFLLGFVLLARPQFGWMERHELPQTNQPPKY 269
Query: 289 NAFQIILLTLSVALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCD 341
A+Q +L ++ LL+ GF LV +FKG +GN C WCHYL CVPTS WKC+
Sbjct: 270 KAYQYVLWVVAFVLLLVGFVVSLVMLFKGKNGNDGCHWCHYLNCVPTSKWKCN 322
>Os08g0546700 Rhomboid-like protein family protein
Length = 323
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/295 (50%), Positives = 184/295 (62%), Gaps = 6/295 (2%)
Query: 53 QERHHRTWVVPLXXXXXXXXXXXXXYYNNCPANGG--RRDCVGRSFLRRLSFQPLRENPV 110
+ER W+VP + N+CP +G R + FL + +FQPLRENP+
Sbjct: 28 EERRWWPWLVPTVLVACIVVFLVEMFVNDCPRHGSPLRGESCVAGFLHQFAFQPLRENPL 87
Query: 111 LGPSAATLRKYGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFG 170
LGPS+ATL K GALDW VVH +QAWRL + WLHAGLIHL NM+SLL IG+RLEQQFG
Sbjct: 88 LGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQFG 147
Query: 171 FWKVGLVYLVSGFGGSVLSVLFISRNGITVXXXXXXXXXXXXXXSELITNWTIYSNRCXX 230
F ++G++YL+SGFGGSVLSVLF+ N I+V SELI NWTIYSN+
Sbjct: 148 FVRIGIIYLLSGFGGSVLSVLFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAA 207
Query: 231 XXXXXXXXXXXXXXXXXPRVDNFAHIGGFATGFLLGFVLLIQPQFGWSEQ----VSSAKS 286
P DNFAHIGGF TGFLLGFVLL +PQFGW E+ ++
Sbjct: 208 IITLLFIIAINLAIGILPHADNFAHIGGFVTGFLLGFVLLARPQFGWMERHELPQTNQPR 267
Query: 287 KYNAFQIILLTLSVALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCD 341
KY A+Q +L +++ LL+ GF LV +FKG +GN C WCHYL C+PTS WKC
Sbjct: 268 KYRAYQYVLWAVALFLLLVGFVIALVMLFKGKNGNDGCHWCHYLNCIPTSRWKCS 322
>Os03g0116400 Similar to Membrane protein
Length = 325
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 148/297 (49%), Positives = 184/297 (61%), Gaps = 10/297 (3%)
Query: 54 ERHHRTWVVPLXXXXXXXXXXXXXYYNNCPANGGRRD--CVGRSFLRRLSFQPLRENPVL 111
ER W+VP Y NNCP + R C+ R FL R SFQPL ENP+L
Sbjct: 31 EREWVPWIVPSFLVANIVVFVLTMYANNCPLHTPPRSGKCIAR-FLGRFSFQPLHENPLL 89
Query: 112 GPSAATLRKYGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGF 171
GPS+ATL+K GAL W VVH +Q +RL TS WLHAG++HL ANM+SL+ IG+RLEQQFG+
Sbjct: 90 GPSSATLQKMGALVWDKVVHEHQGYRLITSIWLHAGVLHLVANMLSLIFIGLRLEQQFGY 149
Query: 172 WKVGLVYLVSGFGGSVLSVLFISRNGITVXXXXXXXXXXXXXXSELITNWTIYSNRCXXX 231
++G +YL+SG GGSVLS LFI RN I+V SEL+TNWTIY+N+
Sbjct: 150 VRIGAIYLLSGLGGSVLSSLFI-RNHISVGASGALFGLLGAMLSELLTNWTIYTNKVAAV 208
Query: 232 XXXXXXXXXXXXXXXXPRVDNFAHIGGFATGFLLGFVLLIQPQFGWSEQVS------SAK 285
P V+NFAHIGGF TGFLLGFVLL++P FGW E+ S +
Sbjct: 209 ITLLFVIAVNLALGILPHVNNFAHIGGFLTGFLLGFVLLMRPHFGWMERYSLPSGSPCSS 268
Query: 286 SKYNAFQIILLTLSVALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCDK 342
KY +Q ILL ++ AL+I GFA G+ +F+G + N C WCHYL+CVPTS W C
Sbjct: 269 KKYLVYQWILLAIATALVIVGFAVGMTMLFRGENANDSCHWCHYLSCVPTSRWTCSN 325
>Os10g0521900 Rhomboid-like protein family protein
Length = 338
Score = 270 bits (691), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 134/251 (53%), Positives = 167/251 (66%), Gaps = 7/251 (2%)
Query: 96 FLRRLSFQPLRENPVLGPSAATLRKYGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANM 155
FLRR SFQPL ENP+LGPS+ATL+K GAL W VVH +Q WRL T WLHAG++HL ANM
Sbjct: 87 FLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLANM 146
Query: 156 ISLLIIGIRLEQQFGFWKVGLVYLVSGFGGSVLSVLFISRNGITVXXXXXXXXXXXXXXS 215
+SL++IG+RLEQQFG+ ++G++YLVSG GGSVLS LFI RN I+V S
Sbjct: 147 LSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFI-RNSISVGASGALFGLLGAMLS 205
Query: 216 ELITNWTIYSNRCXXXXXXXXXXXXXXXXXXXPRVDNFAHIGGFATGFLLGFVLLIQPQF 275
EL TNWTIY+N+ P VDNFAHIGGF TGFLLGF+ L++P +
Sbjct: 206 ELFTNWTIYTNKAAALVTLLIVIAINLAIGILPHVDNFAHIGGFLTGFLLGFIFLMRPHY 265
Query: 276 GWSEQ------VSSAKSKYNAFQIILLTLSVALLIAGFAAGLVSVFKGVDGNAHCSWCHY 329
GW ++ V KY A+Q ILL ++ L + GFA GL +F+GV+ N C WCHY
Sbjct: 266 GWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWCHY 325
Query: 330 LTCVPTSSWKC 340
L+C+PTS W C
Sbjct: 326 LSCIPTSRWTC 336
>Os11g0704800 Similar to Membrane protein
Length = 374
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/297 (47%), Positives = 177/297 (59%), Gaps = 13/297 (4%)
Query: 55 RHHRTWVVPLXXXXXXXXXXXXXYYNNCPA-NGGRRDCVGRSFLRRLSFQPLRENPVLGP 113
R W+V Y N+CP N G DC FL R +FQPL+ENP+LGP
Sbjct: 36 RRWTPWIVAAIALSCVVVFLVSMYVNDCPRRNSG--DCAA-GFLGRFAFQPLKENPLLGP 92
Query: 114 SAATLRKYGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFWK 173
S+ATL K GALD VVHG+Q WRL T WLHAG++HL NM+ LL IGIRLEQ+FGF +
Sbjct: 93 SSATLLKMGALDVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVR 152
Query: 174 VGLVYLVSGFGGSVLSVLFISRNGITVXXXXXXXXXXXXXXSELITNWTIYSNRCXXXXX 233
+GLVYL+SG GGS++S LFI R+ I+V SELITNW++Y+N+
Sbjct: 153 IGLVYLISGLGGSLMSALFI-RSSISVGASGALFGLIGSMLSELITNWSLYANKVAALLT 211
Query: 234 XXXXXXXXXXXXXXPRVDNFAHIGGFATGFLLGFVLLIQPQFGW--------SEQVSSAK 285
PRVDNFAHIGG +GFLLGFV+ I+PQF W +Q + K
Sbjct: 212 LVFVIVVNLALGILPRVDNFAHIGGLISGFLLGFVMFIRPQFAWINQRRVAPGQQPAPVK 271
Query: 286 SKYNAFQIILLTLSVALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCDK 342
K+ +Q IL + +LI GF +V + +G + N HCSWCHYL+CVPT WKC+
Sbjct: 272 RKHKTYQYILWLAAAIMLIVGFTVAIVLLLRGYNANDHCSWCHYLSCVPTKRWKCNS 328
>Os01g0147300 Rhomboid-like protein family protein
Length = 121
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 58/100 (58%), Gaps = 8/100 (8%)
Query: 215 SELITNWTIYSNRCXXXXXXXXXXXXXXXXXXXPRVDNFAHIGGFATGFLLGFVLLIQPQ 274
SELITNWTIY N+ P VDNFAH+GGF +GF LGFVLL++PQ
Sbjct: 22 SELITNWTIYENKFAALLTLVIIILINLAVGILPHVDNFAHLGGFTSGFFLGFVLLVRPQ 81
Query: 275 FGWSEQVSS--------AKSKYNAFQIILLTLSVALLIAG 306
FG+ Q +S KSKY +QIIL ++ +LI+G
Sbjct: 82 FGYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILISG 121
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,303,281
Number of extensions: 352446
Number of successful extensions: 834
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 816
Number of HSP's successfully gapped: 7
Length of query: 342
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 240
Effective length of database: 11,709,973
Effective search space: 2810393520
Effective search space used: 2810393520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 156 (64.7 bits)