Os10g0521900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhomboid-like protein family protein.
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Os10g0521900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhomboid-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 222.3 | 0.701 | 8.12 | 0.898 | 1.23 | 0.61 | -2.31 | -0.123 | -0.504 | 13.1 | 24.6 | 225 | -- | -- |
| 222.35 | 0.694 | 8.13 | 0.858 | 1.22 | 0.605 | -2.27 | -- | -0.515 | 13.1 | 24.59 | 225 | -- | -- |
| 242.12 | 0.725 | 8.15 | 0.587 | 1.26 | 0.622 | -- | 0.659 | -0.571 | 13.3 | 24.57 | 213 | -- | -- |
| 243.63 | 0.727 | 8.12 | 0.785 | 1.24 | 0.636 | -- | -- | -0.492 | 13.3 | 24.6 | 227 | -- | -- |
| 304.1 | 0.812 | 8.18 | 0.926 | -- | 0.781 | -- | -0.575 | -0.673 | -- | 21.22 | 872 | -- | -- |
| 243.32 | 0.731 | 8.2 | 0.677 | 1.03 | -- | -2.38 | -- | -0.837 | 12.3 | -- | -- | -- | -- |
| 267.9 | 0.766 | 8.2 | 0.583 | 1.04 | -- | -- | -- | -0.848 | 12.3 | -- | -- | -- | -- |
| 303.52 | 0.811 | 8.17 | 0.93 | -- | 0.992 | -- | -- | -0.605 | -- | 21.2 | 883 | -- | -- |
| 259.99 | 0.751 | 8.16 | -- | 1.22 | 0.639 | -- | -- | -0.592 | 13.3 | 24.6 | 225 | -- | -- |
| 336.16 | 0.857 | 8.22 | 0.549 | -- | -- | -- | -- | -0.864 | -- | -- | -- | -- | -- |
| 276.88 | 0.778 | 8.22 | -- | 1.03 | -- | -- | -- | -0.913 | 12.2 | -- | -- | -- | -- |
| 320.68 | 0.834 | 8.18 | -- | -- | 0.712 | -- | -- | -0.668 | -- | 24.7 | 933 | -- | -- |
| 344.11 | 0.866 | 8.24 | -- | -- | -- | -- | -- | -0.925 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 211.21 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 14 |
| 6 | 212.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 8 | 212.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 11 | 213.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 14 | 213.44 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 13 |
| 15 | 213.55 | temperature | 25 | 30 | < th | dose independent | rect. | 4 | 17 |
| 28 | 214.43 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 9 |
| 33 | 214.87 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 9 |
| 44 | 215.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 11 |
| 48 | 215.39 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 17 |
| 65 | 215.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 68 | 216.04 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 71 | 216.16 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 15 |
| 76 | 216.33 | temperature | 25 | 90 | > th | dose independent | sin | 1 | NA |
| 88 | 216.47 | temperature | 25 | 90 | < th | dose independent | sin | 23 | NA |
| 119 | 216.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 130 | 217.16 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 9 |
| 137 | 217.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 143 | 217.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 21 |
| 174 | 218.10 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 11 |
| 194 | 218.37 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 9 |
| 206 | 218.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 223 | 218.79 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 254 | 219.09 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 268 | 219.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 296 | 219.57 | temperature | 30 | 30 | < th | dose dependent | sin | 23 | NA |
| 347 | 219.97 | temperature | 10 | 30 | > th | dose dependent | sin | 1 | NA |
| 410 | 220.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 421 | 220.57 | temperature | 25 | 90 | > th | dose independent | rect. | 19 | 22 |
| 453 | 220.77 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 7 |
| 473 | 220.93 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 504 | 221.14 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 20 |
| 515 | 221.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 19 |
| 665 | 222.06 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 673 | 222.10 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 8 | 9 |
| 683 | 222.15 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 22 |
| 757 | 222.47 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 5 |
| 772 | 222.57 | temperature | 20 | 720 | > th | dose independent | rect. | 24 | 7 |
| 835 | 222.87 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 12 |
| 850 | 222.93 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 935 | 223.25 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 13 |
| 940 | 223.27 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 953 | 223.32 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |