BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0521900 Os10g0521900|AK061038
(338 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0521900 Rhomboid-like protein family protein 373 e-103
Os03g0116400 Similar to Membrane protein 310 1e-84
Os09g0525900 Rhomboid-like protein family protein 261 7e-70
Os08g0546700 Rhomboid-like protein family protein 256 2e-68
Os11g0704800 Similar to Membrane protein 239 3e-63
Os04g0569300 Similar to Membrane protein 215 3e-56
>Os10g0521900 Rhomboid-like protein family protein
Length = 338
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/253 (74%), Positives = 188/253 (74%)
Query: 86 GFLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLAN 145
GFLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLAN
Sbjct: 86 GFLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLAN 145
Query: 146 MLSLVLIGLRLEQQFGYMRIGIIYXXXXXXXXXXXXXFIRNSIXXXXXXXXXXXXXXXXX 205
MLSLVLIGLRLEQQFGYMRIGIIY FIRNSI
Sbjct: 146 MLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFIRNSISVGASGALFGLLGAMLS 205
Query: 206 ELFTNWTIYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXMRPHY 265
ELFTNWTIYTNK PHVDNFAH MRPHY
Sbjct: 206 ELFTNWTIYTNKAAALVTLLIVIAINLAIGILPHVDNFAHIGGFLTGFLLGFIFLMRPHY 265
Query: 266 GWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWCHY 325
GWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWCHY
Sbjct: 266 GWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWCHY 325
Query: 326 LSCIPTSRWTCGN 338
LSCIPTSRWTCGN
Sbjct: 326 LSCIPTSRWTCGN 338
>Os03g0116400 Similar to Membrane protein
Length = 325
Score = 310 bits (793), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/252 (59%), Positives = 169/252 (67%)
Query: 87 FLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLANM 146
FL RFSFQPL ENPLLGPSSATLQKMGALVWDKVVHEHQG+RL+T IWLHAGV+HL+ANM
Sbjct: 74 FLGRFSFQPLHENPLLGPSSATLQKMGALVWDKVVHEHQGYRLITSIWLHAGVLHLVANM 133
Query: 147 LSLVLIGLRLEQQFGYMRIGIIYXXXXXXXXXXXXXFIRNSIXXXXXXXXXXXXXXXXXE 206
LSL+ IGLRLEQQFGY+RIG IY FIRN I E
Sbjct: 134 LSLIFIGLRLEQQFGYVRIGAIYLLSGLGGSVLSSLFIRNHISVGASGALFGLLGAMLSE 193
Query: 207 LFTNWTIYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXMRPHYG 266
L TNWTIYTNK PHV+NFAH MRPH+G
Sbjct: 194 LLTNWTIYTNKVAAVITLLFVIAVNLALGILPHVNNFAHIGGFLTGFLLGFVLLMRPHFG 253
Query: 267 WMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWCHYL 326
WM+RY LPS +SKKYL YQWILLA+A+ L ++GFAVG++MLFRG NAN+ CHWCHYL
Sbjct: 254 WMERYSLPSGSPCSSKKYLVYQWILLAIATALVIVGFAVGMTMLFRGENANDSCHWCHYL 313
Query: 327 SCIPTSRWTCGN 338
SC+PTSRWTC N
Sbjct: 314 SCVPTSRWTCSN 325
>Os09g0525900 Rhomboid-like protein family protein
Length = 323
Score = 261 bits (666), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 129/252 (51%), Positives = 157/252 (62%), Gaps = 3/252 (1%)
Query: 86 GFLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLAN 145
GFLRRFSFQPL ENPLLGPSSATLQKMGAL W+KVVH+HQGWRL++CIWLHAG++HL+ N
Sbjct: 72 GFLRRFSFQPLRENPLLGPSSATLQKMGALDWNKVVHQHQGWRLISCIWLHAGLIHLVVN 131
Query: 146 MLSLVLIGLRLEQQFGYMRIGIIYXXXXXXXXXXXXXFIRNS-IXXXXXXXXXXXXXXXX 204
MLSL+ IG+RLEQQFG++RIG IY F+RN+ I
Sbjct: 132 MLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGSVLSALFLRNNYISVGASGALFGLLGSML 191
Query: 205 XELFTNWTIYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXMRPH 264
EL NWTIY+NK PH DNFAH RP
Sbjct: 192 SELIMNWTIYSNKAAAIITLLFIIAINLAIGILPHADNFAHIGGFVTGFLLGFVLLARPQ 251
Query: 265 YGWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWCH 324
+GWM+R+ LP + + KY AYQ++L VA VL ++GF V L MLF+G N N+ CHWCH
Sbjct: 252 FGWMERHELPQTNQ--PPKYKAYQYVLWVVAFVLLLVGFVVSLVMLFKGKNGNDGCHWCH 309
Query: 325 YLSCIPTSRWTC 336
YL+C+PTS+W C
Sbjct: 310 YLNCVPTSKWKC 321
>Os08g0546700 Rhomboid-like protein family protein
Length = 323
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 127/252 (50%), Positives = 156/252 (61%), Gaps = 3/252 (1%)
Query: 86 GFLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLAN 145
GFL +F+FQPL ENPLLGPSSATL+KMGAL W KVVH+HQ WRL++CIWLHAG++HL+ N
Sbjct: 72 GFLHQFAFQPLRENPLLGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVN 131
Query: 146 MLSLVLIGLRLEQQFGYMRIGIIYXXXXXXXXXXXXXFIRNS-IXXXXXXXXXXXXXXXX 204
MLSL+ IGLRLEQQFG++RIGIIY F+RN+ I
Sbjct: 132 MLSLLFIGLRLEQQFGFVRIGIIYLLSGFGGSVLSVLFLRNNYISVGASGALFGLLGSML 191
Query: 205 XELFTNWTIYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXMRPH 264
EL NWTIY+NK PH DNFAH RP
Sbjct: 192 SELIMNWTIYSNKAAAIITLLFIIAINLAIGILPHADNFAHIGGFVTGFLLGFVLLARPQ 251
Query: 265 YGWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWCH 324
+GWM+R+ LP + + +KY AYQ++L AVA L ++GF + L MLF+G N N+ CHWCH
Sbjct: 252 FGWMERHELPQTNQ--PRKYRAYQYVLWAVALFLLLVGFVIALVMLFKGKNGNDGCHWCH 309
Query: 325 YLSCIPTSRWTC 336
YL+CIPTSRW C
Sbjct: 310 YLNCIPTSRWKC 321
>Os11g0704800 Similar to Membrane protein
Length = 374
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 121/255 (47%), Positives = 148/255 (58%), Gaps = 2/255 (0%)
Query: 86 GFLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLAN 145
GFL RF+FQPL ENPLLGPSSATL KMGAL KVVH HQGWRL+TCIWLHAGVVHLL N
Sbjct: 74 GFLGRFAFQPLKENPLLGPSSATLLKMGALDVTKVVHGHQGWRLITCIWLHAGVVHLLIN 133
Query: 146 MLSLVLIGLRLEQQFGYMRIGIIYXXXXXXXXXXXXXFIRNSIXXXXXXXXXXXXXXXXX 205
ML L+ IG+RLEQ+FG++RIG++Y FIR+SI
Sbjct: 134 MLCLLFIGIRLEQEFGFVRIGLVYLISGLGGSLMSALFIRSSISVGASGALFGLIGSMLS 193
Query: 206 ELFTNWTIYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXMRPHY 265
EL TNW++Y NK P VDNFAH +RP +
Sbjct: 194 ELITNWSLYANKVAALLTLVFVIVVNLALGILPRVDNFAHIGGLISGFLLGFVMFIRPQF 253
Query: 266 GWM-QRYVLPSSVKYTSK-KYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWC 323
W+ QR V P K K+ YQ+IL A+++ ++GF V + +L RG NAN+ C WC
Sbjct: 254 AWINQRRVAPGQQPAPVKRKHKTYQYILWLAAAIMLIVGFTVAIVLLLRGYNANDHCSWC 313
Query: 324 HYLSCIPTSRWTCGN 338
HYLSC+PT RW C +
Sbjct: 314 HYLSCVPTKRWKCNS 328
>Os04g0569300 Similar to Membrane protein
Length = 342
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 140/251 (55%), Gaps = 7/251 (2%)
Query: 87 FLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLANM 146
FLRR SFQPL ENP+LGPS+ATL+K GAL W VVH +Q WRL T WLHAG++HL ANM
Sbjct: 96 FLRRLSFQPLRENPVLGPSAATLRKYGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANM 155
Query: 147 LSLVLIGLRLEQQFGYMRIGIIYXXXXXXXXXXXXXFI-RNSIXXXXXXXXXXXXXXXXX 205
+SL++IG+RLEQQFG+ ++G++Y FI RN I
Sbjct: 156 ISLLIIGIRLEQQFGFWKVGLVYLVSGFGGSVLSVLFISRNGITVGASGALFGLLGAMLS 215
Query: 206 ELFTNWTIYTNKXXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXMRPHY 265
EL TNWTIY+N+ P VDNFAH ++P +
Sbjct: 216 ELITNWTIYSNRCAAMVNLIIIAAINLALGILPRVDNFAHIGGFATGFLLGFVLLIQPQF 275
Query: 266 GWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWCHY 325
GW ++ V KY A+Q ILL ++ L + GFA GL +F+GV+ N C WCHY
Sbjct: 276 GWSEQ------VSSAKSKYNAFQIILLTLSVALLIAGFAAGLVSVFKGVDGNAHCSWCHY 329
Query: 326 LSCIPTSRWTC 336
L+C+PTS W C
Sbjct: 330 LTCVPTSSWKC 340
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.140 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,463,778
Number of extensions: 184622
Number of successful extensions: 519
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 6
Length of query: 338
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 237
Effective length of database: 11,762,187
Effective search space: 2787638319
Effective search space used: 2787638319
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)