Os11g0704800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Membrane protein.
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Os11g0704800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Membrane protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.98 | 0.546 | 5.39 | 1.39 | 0.0717 | 1.33 | -0.678 | -0.0749 | -0.214 | 9.87 | 20.45 | 3935 | -- | -- |
| 134.47 | 0.54 | 5.39 | 1.37 | 0.0725 | 1.33 | -0.672 | -- | -0.211 | 9.93 | 20.6 | 3929 | -- | -- |
| 135.66 | 0.542 | 5.37 | 1.36 | 0.0672 | 1.23 | -- | -0.351 | -0.185 | 10.3 | 20.89 | 3798 | -- | -- |
| 135.74 | 0.543 | 5.39 | 1.32 | 0.121 | 1.25 | -- | -- | -0.208 | 12.1 | 20.9 | 3966 | -- | -- |
| 135.75 | 0.543 | 5.37 | 1.37 | -- | 1.23 | -- | -0.429 | -0.178 | -- | 21 | 3803 | -- | -- |
| 169.08 | 0.61 | 5.48 | 0.565 | 0.166 | -- | -0.504 | -- | -0.598 | 12.2 | -- | -- | -- | -- |
| 170 | 0.611 | 5.48 | 0.547 | 0.179 | -- | -- | -- | -0.599 | 13.5 | -- | -- | -- | -- |
| 136.26 | 0.544 | 5.39 | 1.31 | -- | 1.29 | -- | -- | -0.215 | -- | 20.84 | 3821 | -- | -- |
| 160.68 | 0.59 | 5.45 | -- | 0.133 | 0.64 | -- | -- | -0.469 | 12.9 | 22.24 | 1996 | -- | -- |
| 171.97 | 0.613 | 5.48 | 0.54 | -- | -- | -- | -- | -0.602 | -- | -- | -- | -- | -- |
| 177.88 | 0.624 | 5.49 | -- | 0.17 | -- | -- | -- | -0.659 | 13.4 | -- | -- | -- | -- |
| 160.84 | 0.591 | 5.45 | -- | -- | 0.66 | -- | -- | -0.451 | -- | 22.47 | 1962 | -- | -- |
| 179.65 | 0.626 | 5.49 | -- | -- | -- | -- | -- | -0.662 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.55 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 2 | 131.61 | radiation | 10 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 4 | 131.80 | radiation | 10 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 22 | 132.00 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 68 | 132.18 | radiation | 10 | 43200 | < th | dose independent | sin | 15 | NA |
| 106 | 132.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 139 | 132.54 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 142 | 132.55 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 148 | 132.60 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 177 | 132.69 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 182 | 132.70 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 240 | 132.74 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 252 | 132.78 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 279 | 132.82 | humidity | 70 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 365 | 132.99 | radiation | 10 | 43200 | < th | dose independent | no | NA | NA |
| 366 | 132.99 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 497 | 133.10 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 659 | 133.37 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 662 | 133.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 687 | 133.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 690 | 133.40 | radiation | 40 | 43200 | > th | dose dependent | rect. | 12 | 20 |
| 691 | 133.41 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 8 |
| 729 | 133.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 740 | 133.46 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 743 | 133.47 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 747 | 133.47 | radiation | 1 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 777 | 133.51 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |
| 951 | 133.57 | radiation | 20 | 43200 | > th | dose dependent | rect. | 12 | 20 |