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Os08g0546700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Rhomboid-like protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.0338) R2 : 0.881
β1 : 0.0141 (0.127) R2dD : 1.2e-05 R2D : -0.000293
β2 : 5.41 (0.0966) R2dC : 1 R2C : 0.812
β3 : 1.44 (0.131) R2dE : 0.0393 R2E : -0.125
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.08 (0.648) R2dD*E : 0.0179 R2D*E : 0.0081
γ1 : 0.317 (0.0722) R2dN8 : 0.00669 R2N8 : -0.00024
σ : 0.626
deviance : 180.73
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_____
C
peak time of C : 17.5
E
wheather : temperature
threshold : 14.92
memory length : 142
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.5
open length of G : 5.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.81 0.632 10.1 0.0642 5.38 1.39 0.43 5.51 0.323 17.5 15.59 133 22.6 5.03
202.57 0.663 10.1 -0.15 5.38 1.43 -0.761 -- 0.309 17.5 17.45 97 22.6 5.55
180.73 0.626 10.1 0.0141 5.41 1.44 -- 5.08 0.317 17.5 14.92 142 22.5 5.03
202.99 0.664 10.2 -0.22 5.32 1.49 -- -- 0.228 17.6 19 100 22.4 5.82
279.62 0.779 9.78 0.341 -- -6.15 -- 3.44 1.04 -- -8.617 711 18.5 11.3
234.9 0.719 10.1 -0.133 4.96 -- -0.665 -- 0.312 18 -- -- -- --
235.97 0.719 10.1 -0.128 4.96 -- -- -- 0.309 18 -- -- -- --
236.74 0.717 10.1 0.125 -- -6.07 -- -- 0.367 -- -46 754 17.4 12.6
204.29 0.666 10.2 -- 5.3 1.36 -- -- 0.255 17.6 19.04 96 22.5 5.67
1508.52 1.81 10.1 -0.274 -- -- -- -- 0.196 -- -- -- -- --
236.4 0.719 10.1 -- 4.96 -- -- -- 0.323 18 -- -- -- --
225.34 0.699 10.1 -- -- -5.71 -- -- 0.325 -- -145.6 788 16.8 13.2
1510.51 1.81 10.1 -- -- -- -- -- 0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.18 temperature 15.0 90 > th dose dependent rect. 23 5
2 183.56 temperature 15.0 270 > th dose dependent rect. 23 2
9 185.92 temperature 15.0 270 > th dose independent rect. 17 13
12 186.10 temperature 15.0 720 > th dose independent rect. 18 3
34 191.24 temperature 15.0 270 > th dose independent rect. 23 2
36 191.73 temperature 15.0 1440 > th dose independent rect. 6 17
39 191.99 temperature 15.0 90 > th dose independent rect. 23 5
50 192.82 radiation 1.0 30 < th dose independent rect. 23 15
53 192.83 radiation 1.0 30 < th dose independent rect. 23 9
66 193.87 temperature 10.0 270 > th dose dependent rect. 11 15
82 194.59 radiation 1.0 90 < th dose dependent rect. 23 12
88 194.66 temperature 10.0 90 > th dose dependent rect. 13 15
90 194.72 radiation 1.0 90 < th dose dependent rect. 23 9
93 194.74 wind 9.0 270 < th dose independent rect. 1 22
95 194.81 humidity 80.0 270 > th dose independent rect. 23 2
96 194.83 wind 7.0 270 < th dose independent rect. 23 2
102 195.00 temperature 30.0 270 < th dose independent rect. 23 2
103 195.00 humidity 50.0 270 > th dose independent rect. 23 2
106 195.00 atmosphere 995.0 270 > th dose independent rect. 23 2
107 195.00 radiation 1.0 270 < th dose independent rect. 23 2
112 195.00 precipitation 0.1 270 < th dose independent rect. 23 2
113 195.00 temperature 10.0 270 > th dose independent rect. 1 22
114 195.00 radiation 1.0 270 < th dose dependent rect. 23 2
119 195.00 precipitation 0.1 270 < th dose dependent rect. 23 2
121 195.06 temperature 15.0 720 > th dose independent rect. 11 10
131 195.59 radiation 20.0 1440 < th dose dependent rect. 24 5
132 195.60 atmosphere 1010.0 270 < th dose independent rect. 23 2
141 195.82 wind 5.0 90 < th dose independent rect. 23 5
162 196.05 humidity 80.0 90 > th dose independent rect. 23 5
166 196.12 precipitation 0.1 270 < th dose independent rect. 22 4
167 196.12 precipitation 0.1 270 < th dose dependent rect. 22 4
173 196.17 temperature 30.0 90 < th dose independent rect. 23 5
174 196.17 humidity 50.0 90 > th dose independent rect. 23 5
177 196.17 atmosphere 995.0 90 > th dose independent rect. 23 5
178 196.17 radiation 1.0 90 < th dose independent rect. 23 5
183 196.17 wind 9.0 90 < th dose independent rect. 4 19
184 196.17 temperature 10.0 90 > th dose independent rect. 4 19
185 196.17 radiation 1.0 90 < th dose dependent rect. 23 5
191 196.21 wind 9.0 270 < th dose independent rect. 2 20
209 196.36 radiation 40.0 90 < th dose independent rect. 4 9
210 196.36 temperature 10.0 270 > th dose independent rect. 2 20
218 196.40 humidity 50.0 270 > th dose dependent rect. 23 2
221 196.47 atmosphere 1010.0 90 < th dose independent rect. 23 5
233 196.52 wind 9.0 270 < th dose dependent rect. 23 2
248 197.01 radiation 10.0 1440 < th dose independent rect. 24 5
279 197.38 temperature 15.0 1440 > th dose independent rect. 6 8
286 197.53 atmosphere 1015.0 90 < th dose independent rect. 4 19
290 197.57 humidity 50.0 90 > th dose dependent rect. 23 5
319 197.73 radiation 1.0 30 < th dose independent sin 6 NA
353 198.10 temperature 15.0 90 > th dose independent rect. 13 15
360 198.21 radiation 1.0 30 > th dose independent sin 7 NA
371 198.27 wind 9.0 90 < th dose dependent rect. 23 5
374 198.31 radiation 40.0 270 < th dose independent rect. 2 9
375 198.31 atmosphere 995.0 270 > th dose independent rect. 2 20
382 198.37 temperature 15.0 270 > th dose independent rect. 6 11
385 198.43 precipitation 0.1 270 < th dose independent rect. 13 13
386 198.43 precipitation 0.1 270 < th dose dependent rect. 13 13
388 198.45 atmosphere 995.0 90 > th dose independent rect. 4 19
392 198.47 humidity 50.0 270 > th dose independent rect. 2 20
403 198.62 humidity 50.0 270 > th dose independent rect. 3 18
437 198.78 wind 1.0 90 > th dose independent rect. 23 5
471 199.18 temperature 15.0 720 > th dose independent rect. 18 8
493 199.27 atmosphere 1010.0 720 < th dose independent rect. 18 3
494 199.27 humidity 50.0 270 > th dose independent rect. 17 13
535 199.49 temperature 15.0 270 > th dose independent sin 9 NA
557 199.51 atmosphere 1015.0 270 < th dose independent rect. 2 20
563 199.54 temperature 30.0 90 < th dose independent rect. 4 19
582 199.65 precipitation 0.1 270 < th dose independent rect. 2 20
583 199.65 precipitation 0.1 270 < th dose dependent rect. 2 20
589 199.75 radiation 20.0 270 < th dose dependent rect. 17 13
597 199.85 precipitation 0.1 90 < th dose independent rect. 13 15
598 199.85 precipitation 0.1 90 < th dose dependent rect. 13 15
599 199.86 temperature 15.0 720 > th dose independent rect. 6 3
600 199.86 precipitation 0.1 720 < th dose independent rect. 1 5
601 199.86 precipitation 0.1 720 < th dose dependent rect. 1 5
613 199.97 radiation 1.0 30 < th dose dependent sin 6 NA
625 200.13 wind 1.0 270 > th dose independent rect. 21 6
626 200.14 precipitation 0.1 270 < th dose independent rect. 11 15
627 200.14 precipitation 0.1 270 < th dose dependent rect. 11 15
631 200.16 temperature 10.0 1440 > th dose independent rect. 24 5
634 200.16 temperature 30.0 1440 < th dose independent rect. 24 5
638 200.16 humidity 50.0 1440 > th dose independent rect. 24 5
647 200.16 atmosphere 995.0 1440 > th dose independent rect. 24 5
660 200.16 temperature 30.0 270 < th dose independent rect. 17 13
664 200.18 temperature 15.0 720 > th dose independent rect. 14 8
674 200.24 temperature 15.0 1440 > th dose independent rect. 8 15
680 200.30 temperature 15.0 10 > th dose independent rect. 19 13
683 200.31 temperature 15.0 720 > th dose dependent rect. 15 3
690 200.41 precipitation 0.1 270 < th dose independent rect. 2 11
691 200.41 precipitation 0.1 270 < th dose dependent rect. 2 11
726 200.56 atmosphere 995.0 270 > th dose independent rect. 17 13
727 200.57 precipitation 0.1 270 < th dose independent rect. 6 11
728 200.57 precipitation 0.1 270 < th dose dependent rect. 6 11
743 200.73 temperature 10.0 270 > th dose dependent rect. 21 11
747 200.76 temperature 30.0 720 < th dose independent rect. 18 3
757 200.80 atmosphere 1015.0 270 < th dose independent rect. 6 11
759 200.80 radiation 20.0 270 < th dose independent rect. 17 13
791 200.88 wind 9.0 270 < th dose independent rect. 17 13
797 200.89 radiation 1.0 30 > th dose independent rect. 5 8
814 200.92 temperature 30.0 270 < th dose dependent rect. 3 18
818 200.94 wind 7.0 720 < th dose independent rect. 1 5
828 200.99 temperature 10.0 720 > th dose independent rect. 13 5
829 200.99 atmosphere 1015.0 720 < th dose independent rect. 13 5
830 200.99 temperature 10.0 720 > th dose independent rect. 18 19
834 201.03 atmosphere 995.0 720 > th dose independent rect. 18 19
835 201.04 temperature 10.0 90 > th dose dependent rect. 15 13
863 201.12 wind 9.0 270 < th dose independent rect. 6 11
941 201.42 wind 9.0 720 < th dose independent rect. 13 5
943 201.43 temperature 15.0 90 > th dose independent rect. 4 9
1000 201.61 temperature 15.0 270 > th dose independent rect. 21 12