BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0546700 Os08g0546700|AK061056
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0546700 Rhomboid-like protein family protein 457 e-129
Os09g0525900 Rhomboid-like protein family protein 407 e-114
Os03g0116400 Similar to Membrane protein 309 2e-84
Os11g0704800 Similar to Membrane protein 295 2e-80
Os10g0521900 Rhomboid-like protein family protein 263 1e-70
Os04g0569300 Similar to Membrane protein 255 3e-68
>Os08g0546700 Rhomboid-like protein family protein
Length = 323
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 227/297 (76%), Positives = 227/297 (76%)
Query: 27 DEERRWWPWLVPTVLVACIVVFLVEMFVNDCPRHGSPLRGESCVAGFLHQFAFQPLRENP 86
DEERRWWPWLVPTVLVACIVVFLVEMFVNDCPRHGSPLRGESCVAGFLHQFAFQPLRENP
Sbjct: 27 DEERRWWPWLVPTVLVACIVVFLVEMFVNDCPRHGSPLRGESCVAGFLHQFAFQPLRENP 86
Query: 87 LLGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQF 146
LLGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQF
Sbjct: 87 LLGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQF 146
Query: 147 GFVRIGIIYLLSGFGGSVLSVLFLRNNYIXXXXXXXXXXXXXXXXXELIMNWTIYSNKXX 206
GFVRIGIIYLLSGFGGSVLSVLFLRNNYI ELIMNWTIYSNK
Sbjct: 147 GFVRIGIIYLLSGFGGSVLSVLFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAA 206
Query: 207 XXXXXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARPQFGWMERHELPQTNQP 266
PHADNFAHI ARPQFGWMERHELPQTNQP
Sbjct: 207 AIITLLFIIAINLAIGILPHADNFAHIGGFVTGFLLGFVLLARPQFGWMERHELPQTNQP 266
Query: 267 RKYRAYQYXXXXXXXXXXXXXXXXXXXMLFKGKNGNDGCHWCHYLNCIPTSRWKCST 323
RKYRAYQY MLFKGKNGNDGCHWCHYLNCIPTSRWKCST
Sbjct: 267 RKYRAYQYVLWAVALFLLLVGFVIALVMLFKGKNGNDGCHWCHYLNCIPTSRWKCST 323
>Os09g0525900 Rhomboid-like protein family protein
Length = 323
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 198/296 (66%), Positives = 215/296 (72%), Gaps = 2/296 (0%)
Query: 28 EERRWWPWLVPTVLVACIVVFLVEMFVNDCPRHGSPLRGESCVAGFLHQFAFQPLRENPL 87
++R+WWPWLVPTV+VACI VF+VEM+VN+CP+HGS L G CVAGFL +F+FQPLRENPL
Sbjct: 30 DDRKWWPWLVPTVIVACIAVFIVEMYVNNCPKHGSALGG--CVAGFLRRFSFQPLRENPL 87
Query: 88 LGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQFG 147
LGPSSATL+KMGALDW KVVHQHQ WRLISCIWLHAGLIHL+VNMLSLLFIG+RLEQQFG
Sbjct: 88 LGPSSATLQKMGALDWNKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFG 147
Query: 148 FVRIGIIYLLSGFGGSVLSVLFLRNNYIXXXXXXXXXXXXXXXXXELIMNWTIYSNKXXX 207
FVRIG IYLLSGFGGSVLS LFLRNNYI ELIMNWTIYSNK
Sbjct: 148 FVRIGAIYLLSGFGGSVLSALFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAA 207
Query: 208 XXXXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARPQFGWMERHELPQTNQPR 267
PHADNFAHI ARPQFGWMERHELPQTNQP
Sbjct: 208 IITLLFIIAINLAIGILPHADNFAHIGGFVTGFLLGFVLLARPQFGWMERHELPQTNQPP 267
Query: 268 KYRAYQYXXXXXXXXXXXXXXXXXXXMLFKGKNGNDGCHWCHYLNCIPTSRWKCST 323
KY+AYQY MLFKGKNGNDGCHWCHYLNC+PTS+WKC+T
Sbjct: 268 KYKAYQYVLWVVAFVLLLVGFVVSLVMLFKGKNGNDGCHWCHYLNCVPTSKWKCNT 323
>Os03g0116400 Similar to Membrane protein
Length = 325
Score = 309 bits (792), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/298 (51%), Positives = 187/298 (62%), Gaps = 4/298 (1%)
Query: 27 DEERRWWPWLVPTVLVACIVVFLVEMFVNDCPRHGSPLRGESCVAGFLHQFAFQPLRENP 86
+ ER W PW+VP+ LVA IVVF++ M+ N+CP H +P R C+A FL +F+FQPL ENP
Sbjct: 29 EGEREWVPWIVPSFLVANIVVFVLTMYANNCPLH-TPPRSGKCIARFLGRFSFQPLHENP 87
Query: 87 LLGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQF 146
LLGPSSATL+KMGAL W KVVH+HQ +RLI+ IWLHAG++HL+ NMLSL+FIGLRLEQQF
Sbjct: 88 LLGPSSATLQKMGALVWDKVVHEHQGYRLITSIWLHAGVLHLVANMLSLIFIGLRLEQQF 147
Query: 147 GFVRIGIIYLLSGFGGSVLSVLFLRNNYIXXXXXXXXXXXXXXXXXELIMNWTIYSNKXX 206
G+VRIG IYLLSG GGSVLS LF+R N+I EL+ NWTIY+NK
Sbjct: 148 GYVRIGAIYLLSGLGGSVLSSLFIR-NHISVGASGALFGLLGAMLSELLTNWTIYTNKVA 206
Query: 207 XXXXXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARPQFGWMERHELPQTN-- 264
PH +NFAHI RP FGWMER+ LP +
Sbjct: 207 AVITLLFVIAVNLALGILPHVNNFAHIGGFLTGFLLGFVLLMRPHFGWMERYSLPSGSPC 266
Query: 265 QPRKYRAYQYXXXXXXXXXXXXXXXXXXXMLFKGKNGNDGCHWCHYLNCIPTSRWKCS 322
+KY YQ+ MLF+G+N ND CHWCHYL+C+PTSRW CS
Sbjct: 267 SSKKYLVYQWILLAIATALVIVGFAVGMTMLFRGENANDSCHWCHYLSCVPTSRWTCS 324
>Os11g0704800 Similar to Membrane protein
Length = 374
Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/298 (48%), Positives = 181/298 (60%), Gaps = 9/298 (3%)
Query: 30 RRWWPWLVPTVLVACIVVFLVEMFVNDCPRHGSPLRGESCVAGFLHQFAFQPLRENPLLG 89
RRW PW+V + ++C+VVFLV M+VNDCPR S C AGFL +FAFQPL+ENPLLG
Sbjct: 36 RRWTPWIVAAIALSCVVVFLVSMYVNDCPRRNS----GDCAAGFLGRFAFQPLKENPLLG 91
Query: 90 PSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQFGFV 149
PSSATL KMGALD KVVH HQ WRLI+CIWLHAG++HL++NML LLFIG+RLEQ+FGFV
Sbjct: 92 PSSATLLKMGALDVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFV 151
Query: 150 RIGIIYLLSGFGGSVLSVLFLRNNYIXXXXXXXXXXXXXXXXXELIMNWTIYSNKXXXXX 209
RIG++YL+SG GGS++S LF+R++ I ELI NW++Y+NK
Sbjct: 152 RIGLVYLISGLGGSLMSALFIRSS-ISVGASGALFGLIGSMLSELITNWSLYANKVAALL 210
Query: 210 XXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARPQFGWMERHELPQTNQP--- 266
P DNFAHI RPQF W+ + + QP
Sbjct: 211 TLVFVIVVNLALGILPRVDNFAHIGGLISGFLLGFVMFIRPQFAWINQRRVAPGQQPAPV 270
Query: 267 -RKYRAYQYXXXXXXXXXXXXXXXXXXXMLFKGKNGNDGCHWCHYLNCIPTSRWKCST 323
RK++ YQY +L +G N ND C WCHYL+C+PT RWKC++
Sbjct: 271 KRKHKTYQYILWLAAAIMLIVGFTVAIVLLLRGYNANDHCSWCHYLSCVPTKRWKCNS 328
>Os10g0521900 Rhomboid-like protein family protein
Length = 338
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 130/253 (51%), Positives = 157/253 (62%), Gaps = 3/253 (1%)
Query: 71 AGFLHQFAFQPLRENPLLGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIV 130
+GFL +F+FQPL ENPLLGPSSATL+KMGAL W KVVH+HQ WRL++CIWLHAG++HL+
Sbjct: 85 SGFLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLA 144
Query: 131 NMLSLLFIGLRLEQQFGFVRIGIIYLLSGFGGSVLSVLFLRNNYIXXXXXXXXXXXXXXX 190
NMLSL+ IGLRLEQQFG++RIGIIYL+SG GGSVLS LF+RN+ I
Sbjct: 145 NMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFIRNS-ISVGASGALFGLLGAM 203
Query: 191 XXELIMNWTIYSNKXXXXXXXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARP 250
EL NWTIY+NK PH DNFAHI RP
Sbjct: 204 LSELFTNWTIYTNKAAALVTLLIVIAINLAIGILPHVDNFAHIGGFLTGFLLGFIFLMRP 263
Query: 251 QFGWMERHELPQTNQ--PRKYRAYQYXXXXXXXXXXXXXXXXXXXMLFKGKNGNDGCHWC 308
+GWM+R+ LP + + +KY AYQ+ MLF+G N N+ CHWC
Sbjct: 264 HYGWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWC 323
Query: 309 HYLNCIPTSRWKC 321
HYL+CIPTSRW C
Sbjct: 324 HYLSCIPTSRWTC 336
>Os04g0569300 Similar to Membrane protein
Length = 342
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 132/295 (44%), Positives = 166/295 (56%), Gaps = 6/295 (2%)
Query: 28 EERRWWPWLVPTVLVACIVVFLVEMFVNDCPRHGSPLRGESCVAGFLHQFAFQPLRENPL 87
+ER W+VP V++A + +F+V M+ N+CP +G R + FL + +FQPLRENP+
Sbjct: 53 QERHHRTWVVPLVVIANVAMFVVVMYYNNCPANGG--RRDCVGRSFLRRLSFQPLRENPV 110
Query: 88 LGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQFG 147
LGPS+ATL K GALDW VVH +QAWRL + WLHAGLIHL NM+SLL IG+RLEQQFG
Sbjct: 111 LGPSAATLRKYGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFG 170
Query: 148 FVRIGIIYLLSGFGGSVLSVLFLRNNYIXXXXXXXXXXXXXXXXXELIMNWTIYSNKXXX 207
F ++G++YL+SGFGGSVLSVLF+ N I ELI NWTIYSN+
Sbjct: 171 FWKVGLVYLVSGFGGSVLSVLFISRNGITVGASGALFGLLGAMLSELITNWTIYSNRCAA 230
Query: 208 XXXXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARPQFGWMERHELPQTNQPR 267
P DNFAHI +PQFGW E+ ++
Sbjct: 231 MVNLIIIAAINLALGILPRVDNFAHIGGFATGFLLGFVLLIQPQFGWSEQ----VSSAKS 286
Query: 268 KYRAYQYXXXXXXXXXXXXXXXXXXXMLFKGKNGNDGCHWCHYLNCIPTSRWKCS 322
KY A+Q +FKG +GN C WCHYL C+PTS WKC
Sbjct: 287 KYNAFQIILLTLSVALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCD 341
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.142 0.495
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,588,462
Number of extensions: 290401
Number of successful extensions: 667
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 642
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 156 (64.7 bits)