Os03g0116400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Membrane protein.
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Os03g0116400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Membrane protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.6 | 0.522 | 7.18 | 1.9 | 2.22 | -0.934 | -0.198 | -0.41 | 0.133 | 6.94 | 24.17 | 100 | -- | -- |
| 123.65 | 0.518 | 7.17 | 1.94 | 2.22 | -0.971 | -0.149 | -- | 0.143 | 6.95 | 24.1 | 107 | -- | -- |
| 123.66 | 0.518 | 7.18 | 1.9 | 2.22 | -0.931 | -- | -0.335 | 0.136 | 6.93 | 24.1 | 108 | -- | -- |
| 123.71 | 0.518 | 7.17 | 1.95 | 2.21 | -0.965 | -- | -- | 0.15 | 6.94 | 24.1 | 108 | -- | -- |
| 276.17 | 0.774 | 7.13 | 2.9 | -- | -2.88 | -- | 4.74 | 0.447 | -- | 24.62 | 389 | -- | -- |
| 138.76 | 0.552 | 7.19 | 1.77 | 2.51 | -- | 0.271 | -- | 0.0386 | 6.47 | -- | -- | -- | -- |
| 138.95 | 0.552 | 7.19 | 1.78 | 2.51 | -- | -- | -- | 0.0378 | 6.48 | -- | -- | -- | -- |
| 284.34 | 0.785 | 7.19 | 2.26 | -- | -2.5 | -- | -- | 0.322 | -- | 24.43 | 384 | -- | -- |
| 218.25 | 0.688 | 7.24 | -- | 2.4 | -0.488 | -- | -- | -0.164 | 6.61 | 26.3 | 108 | -- | -- |
| 466.33 | 1.01 | 7.24 | 1.84 | -- | -- | -- | -- | 0.0901 | -- | -- | -- | -- | -- |
| 222.2 | 0.697 | 7.24 | -- | 2.53 | -- | -- | -- | -0.16 | 6.44 | -- | -- | -- | -- |
| 414.89 | 0.949 | 7.26 | -- | -- | -2.18 | -- | -- | 0.0247 | -- | 24.7 | 370 | -- | -- |
| 555.68 | 1.1 | 7.29 | -- | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 5 | 113.43 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 6 | 114.70 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 25 | 116.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 29 | 116.69 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 23 | 19 |
| 52 | 117.64 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 179 | 120.29 | temperature | 20.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 205 | 120.54 | temperature | 10.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 214 | 120.62 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 221 | 120.74 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 16 | 7 |
| 224 | 120.79 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 227 | 120.80 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 300 | 121.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 13 |
| 307 | 121.49 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 328 | 121.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 339 | 121.71 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 19 |
| 346 | 121.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 356 | 121.79 | temperature | 20.0 | 720 | < th | dose independent | rect. | 2 | 5 |
| 358 | 121.81 | temperature | 20.0 | 90 | > th | dose dependent | sin | 23 | NA |
| 368 | 121.87 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 397 | 122.04 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 4 |
| 429 | 122.22 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 4 |
| 433 | 122.24 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 6 | 22 |
| 446 | 122.30 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 6 |
| 469 | 122.38 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 477 | 122.42 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 16 | 5 |
| 480 | 122.42 | temperature | 30.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 482 | 122.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 487 | 122.45 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 17 |
| 510 | 122.56 | radiation | 1.0 | 10 | < th | dose dependent | sin | 19 | NA |
| 512 | 122.56 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 17 | 6 |
| 519 | 122.57 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 19 |
| 528 | 122.59 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 10 |
| 538 | 122.62 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 569 | 122.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 13 |
| 570 | 122.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 571 | 122.70 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 16 |
| 573 | 122.71 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 4 | 19 |
| 577 | 122.73 | temperature | 25.0 | 90 | > th | dose independent | rect. | 8 | 10 |
| 583 | 122.75 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 19 |
| 601 | 122.79 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 10 | 13 |
| 626 | 122.88 | radiation | 1.0 | 30 | < th | dose independent | sin | 19 | NA |
| 634 | 122.89 | radiation | 1.0 | 30 | > th | dose independent | sin | 19 | NA |
| 644 | 122.91 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 13 | 10 |
| 669 | 122.98 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 6 |
| 686 | 123.02 | temperature | 30.0 | 30 | < th | dose independent | rect. | 17 | 21 |
| 704 | 123.06 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 4 |
| 705 | 123.06 | temperature | 30.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 716 | 123.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 753 | 123.18 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 790 | 123.25 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 815 | 123.30 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 817 | 123.31 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 19 |
| 819 | 123.31 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 6 |
| 824 | 123.32 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 9 | 14 |
| 837 | 123.35 | radiation | 1.0 | 90 | < th | dose independent | rect. | 4 | 19 |
| 840 | 123.35 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 14 |
| 843 | 123.36 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 6 |
| 858 | 123.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 11 |
| 860 | 123.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 874 | 123.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 11 |
| 875 | 123.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 11 |
| 876 | 123.44 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 877 | 123.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 13 |
| 925 | 123.56 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 17 | 3 |
| 955 | 123.64 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 19 |