Os09g0525900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhomboid-like protein family protein.
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Os09g0525900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhomboid-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.54 | 0.35 | 12.9 | -0.413 | 1.27 | -0.591 | 0.762 | -0.276 | 0.142 | 5.4 | 20.59 | 929 | -- | -- |
| 55.74 | 0.348 | 12.9 | -0.363 | 1.28 | -0.558 | 0.753 | -- | 0.152 | 5.42 | 20.5 | 942 | -- | -- |
| 56.93 | 0.351 | 12.9 | -0.405 | 1.28 | -0.602 | -- | -0.276 | 0.143 | 5.46 | 20.53 | 954 | -- | -- |
| 57.14 | 0.352 | 12.9 | -0.355 | 1.28 | -0.569 | -- | -- | 0.152 | 5.47 | 20.55 | 946 | -- | -- |
| 132.88 | 0.537 | 12.9 | -0.41 | -- | -0.754 | -- | -0.583 | 0.198 | -- | 20.81 | 461 | -- | -- |
| 64.27 | 0.376 | 12.9 | -0.583 | 1.28 | -- | 0.822 | -- | 0.0273 | 5.63 | -- | -- | -- | -- |
| 65.9 | 0.38 | 12.9 | -0.578 | 1.29 | -- | -- | -- | 0.0241 | 5.7 | -- | -- | -- | -- |
| 93.16 | 0.45 | 12.9 | -0.304 | -- | -0.916 | -- | -- | 0.301 | -- | 26.3 | 307 | -- | -- |
| 59.97 | 0.361 | 12.9 | -- | 1.28 | -0.694 | -- | -- | 0.212 | 5.41 | 20.48 | 950 | -- | -- |
| 152.01 | 0.576 | 13 | -0.538 | -- | -- | -- | -- | 0.0547 | -- | -- | -- | -- | -- |
| 74.72 | 0.404 | 12.9 | -- | 1.28 | -- | -- | -- | 0.0885 | 5.72 | -- | -- | -- | -- |
| 95.51 | 0.455 | 12.9 | -- | -- | -0.947 | -- | -- | 0.344 | -- | 26.34 | 309 | -- | -- |
| 159.63 | 0.59 | 13 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 11 |
| 3 | 48.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 4 | 48.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 5 | 48.16 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 24 | 48.74 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 10 |
| 43 | 49.32 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 52 | 49.42 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 55 | 49.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 71 | 49.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 135 | 50.42 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 164 | 50.70 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 9 |
| 183 | 50.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 189 | 50.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 231 | 50.98 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 288 | 51.28 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 14 |
| 341 | 51.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 622 | 52.60 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |