BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0525900 Os09g0525900|AK059988
(323 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0525900 Rhomboid-like protein family protein 469 e-133
Os08g0546700 Rhomboid-like protein family protein 401 e-112
Os03g0116400 Similar to Membrane protein 306 1e-83
Os11g0704800 Similar to Membrane protein 295 4e-80
Os10g0521900 Rhomboid-like protein family protein 262 2e-70
Os04g0569300 Similar to Membrane protein 260 1e-69
>Os09g0525900 Rhomboid-like protein family protein
Length = 323
Score = 469 bits (1208), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/323 (73%), Positives = 236/323 (73%)
Query: 1 MASNGGEEKSRVAAXXXXXXXXXXXXXXRDDRKWWPWLVPTVIVACIAVFIVEMYVNNCP 60
MASNGGEEKSRVAA RDDRKWWPWLVPTVIVACIAVFIVEMYVNNCP
Sbjct: 1 MASNGGEEKSRVAAGYGGGGYGYGGYEGRDDRKWWPWLVPTVIVACIAVFIVEMYVNNCP 60
Query: 61 KHGSALGGCVAGFLRRFSFQPLRENPLLGPSSATLQKMGALDWNKVVHQHQGWRLISCIW 120
KHGSALGGCVAGFLRRFSFQPLRENPLLGPSSATLQKMGALDWNKVVHQHQGWRLISCIW
Sbjct: 61 KHGSALGGCVAGFLRRFSFQPLRENPLLGPSSATLQKMGALDWNKVVHQHQGWRLISCIW 120
Query: 121 LHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGSVLSALFLRNNYIXXXXX 180
LHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGSVLSALFLRNNYI
Sbjct: 121 LHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGSVLSALFLRNNYISVGAS 180
Query: 181 XXXXXXXXXXXXELIMNWTIYSNKXXXXXXXXXXXXXXXXXXXXPHADNFAHIXXXXXXX 240
ELIMNWTIYSNK PHADNFAHI
Sbjct: 181 GALFGLLGSMLSELIMNWTIYSNKAAAIITLLFIIAINLAIGILPHADNFAHIGGFVTGF 240
Query: 241 XXXXXXXARPQFGWMERHELPQTNQPPKYKAYQYXXXXXXXXXXXXXXXXXXXXXXKGKN 300
ARPQFGWMERHELPQTNQPPKYKAYQY KGKN
Sbjct: 241 LLGFVLLARPQFGWMERHELPQTNQPPKYKAYQYVLWVVAFVLLLVGFVVSLVMLFKGKN 300
Query: 301 GNDGCHWCHYLNCVPTSKWKCNT 323
GNDGCHWCHYLNCVPTSKWKCNT
Sbjct: 301 GNDGCHWCHYLNCVPTSKWKCNT 323
>Os08g0546700 Rhomboid-like protein family protein
Length = 323
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/296 (65%), Positives = 212/296 (71%), Gaps = 2/296 (0%)
Query: 30 DDRKWWPWLVPTVIVACIAVFIVEMYVNNCPKHGSALGG--CVAGFLRRFSFQPLRENPL 87
++R+WWPWLVPTV+VACI VF+VEM+VN+CP+HGS L G CVAGFL +F+FQPLRENPL
Sbjct: 28 EERRWWPWLVPTVLVACIVVFLVEMFVNDCPRHGSPLRGESCVAGFLHQFAFQPLRENPL 87
Query: 88 LGPSSATLQKMGALDWNKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFG 147
LGPSSATL+KMGALDW KVVHQHQ WRLISCIWLHAGLIHL+VNMLSLLFIG+RLEQQFG
Sbjct: 88 LGPSSATLEKMGALDWAKVVHQHQAWRLISCIWLHAGLIHLIVNMLSLLFIGLRLEQQFG 147
Query: 148 FVRIGAIYLLSGFGGSVLSALFLRNNYIXXXXXXXXXXXXXXXXXELIMNWTIYSNKXXX 207
FVRIG IYLLSGFGGSVLS LFLRNNYI ELIMNWTIYSNK
Sbjct: 148 FVRIGIIYLLSGFGGSVLSVLFLRNNYISVGASGALFGLLGSMLSELIMNWTIYSNKAAA 207
Query: 208 XXXXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARPQFGWMERHELPQTNQPP 267
PHADNFAHI ARPQFGWMERHELPQTNQP
Sbjct: 208 IITLLFIIAINLAIGILPHADNFAHIGGFVTGFLLGFVLLARPQFGWMERHELPQTNQPR 267
Query: 268 KYKAYQYXXXXXXXXXXXXXXXXXXXXXXKGKNGNDGCHWCHYLNCVPTSKWKCNT 323
KY+AYQY KGKNGNDGCHWCHYLNC+PTS+WKC+T
Sbjct: 268 KYRAYQYVLWAVALFLLLVGFVIALVMLFKGKNGNDGCHWCHYLNCIPTSRWKCST 323
>Os03g0116400 Similar to Membrane protein
Length = 325
Score = 306 bits (784), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 153/297 (51%), Positives = 184/297 (61%), Gaps = 4/297 (1%)
Query: 29 RDDRKWWPWLVPTVIVACIAVFIVEMYVNNCPKHGSALGG-CVAGFLRRFSFQPLRENPL 87
+R+W PW+VP+ +VA I VF++ MY NNCP H G C+A FL RFSFQPL ENPL
Sbjct: 29 EGEREWVPWIVPSFLVANIVVFVLTMYANNCPLHTPPRSGKCIARFLGRFSFQPLHENPL 88
Query: 88 LGPSSATLQKMGALDWNKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFG 147
LGPSSATLQKMGAL W+KVVH+HQG+RLI+ IWLHAG++HLV NMLSL+FIG+RLEQQFG
Sbjct: 89 LGPSSATLQKMGALVWDKVVHEHQGYRLITSIWLHAGVLHLVANMLSLIFIGLRLEQQFG 148
Query: 148 FVRIGAIYLLSGFGGSVLSALFLRNNYIXXXXXXXXXXXXXXXXXELIMNWTIYSNKXXX 207
+VRIGAIYLLSG GGSVLS+LF+R N+I EL+ NWTIY+NK
Sbjct: 149 YVRIGAIYLLSGLGGSVLSSLFIR-NHISVGASGALFGLLGAMLSELLTNWTIYTNKVAA 207
Query: 208 XXXXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARPQFGWMERHELPQTN--Q 265
PH +NFAHI RP FGWMER+ LP +
Sbjct: 208 VITLLFVIAVNLALGILPHVNNFAHIGGFLTGFLLGFVLLMRPHFGWMERYSLPSGSPCS 267
Query: 266 PPKYKAYQYXXXXXXXXXXXXXXXXXXXXXXKGKNGNDGCHWCHYLNCVPTSKWKCN 322
KY YQ+ +G+N ND CHWCHYL+CVPTS+W C+
Sbjct: 268 SKKYLVYQWILLAIATALVIVGFAVGMTMLFRGENANDSCHWCHYLSCVPTSRWTCS 324
>Os11g0704800 Similar to Membrane protein
Length = 374
Score = 295 bits (754), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 144/296 (48%), Positives = 179/296 (60%), Gaps = 7/296 (2%)
Query: 32 RKWWPWLVPTVIVACIAVFIVEMYVNNCPKHGSALGGCVAGFLRRFSFQPLRENPLLGPS 91
R+W PW+V + ++C+ VF+V MYVN+CP+ S G C AGFL RF+FQPL+ENPLLGPS
Sbjct: 36 RRWTPWIVAAIALSCVVVFLVSMYVNDCPRRNS--GDCAAGFLGRFAFQPLKENPLLGPS 93
Query: 92 SATLQKMGALDWNKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRI 151
SATL KMGALD KVVH HQGWRLI+CIWLHAG++HL++NML LLFIGIRLEQ+FGFVRI
Sbjct: 94 SATLLKMGALDVTKVVHGHQGWRLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRI 153
Query: 152 GAIYLLSGFGGSVLSALFLRNNYIXXXXXXXXXXXXXXXXXELIMNWTIYSNKXXXXXXX 211
G +YL+SG GGS++SALF+R++ I ELI NW++Y+NK
Sbjct: 154 GLVYLISGLGGSLMSALFIRSS-ISVGASGALFGLIGSMLSELITNWSLYANKVAALLTL 212
Query: 212 XXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARPQFGWMERHELPQTNQPP---- 267
P DNFAHI RPQF W+ + + QP
Sbjct: 213 VFVIVVNLALGILPRVDNFAHIGGLISGFLLGFVMFIRPQFAWINQRRVAPGQQPAPVKR 272
Query: 268 KYKAYQYXXXXXXXXXXXXXXXXXXXXXXKGKNGNDGCHWCHYLNCVPTSKWKCNT 323
K+K YQY +G N ND C WCHYL+CVPT +WKCN+
Sbjct: 273 KHKTYQYILWLAAAIMLIVGFTVAIVLLLRGYNANDHCSWCHYLSCVPTKRWKCNS 328
>Os10g0521900 Rhomboid-like protein family protein
Length = 338
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 128/254 (50%), Positives = 156/254 (61%), Gaps = 3/254 (1%)
Query: 71 AGFLRRFSFQPLRENPLLGPSSATLQKMGALDWNKVVHQHQGWRLISCIWLHAGLIHLVV 130
+GFLRRFSFQPL ENPLLGPSSATLQKMGAL W+KVVH+HQGWRL++CIWLHAG++HL+
Sbjct: 85 SGFLRRFSFQPLSENPLLGPSSATLQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLA 144
Query: 131 NMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGSVLSALFLRNNYIXXXXXXXXXXXXXXX 190
NMLSL+ IG+RLEQQFG++RIG IYL+SG GGSVLS+LF+RN+ I
Sbjct: 145 NMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLSSLFIRNS-ISVGASGALFGLLGAM 203
Query: 191 XXELIMNWTIYSNKXXXXXXXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARP 250
EL NWTIY+NK PH DNFAHI RP
Sbjct: 204 LSELFTNWTIYTNKAAALVTLLIVIAINLAIGILPHVDNFAHIGGFLTGFLLGFIFLMRP 263
Query: 251 QFGWMERHELPQTNQ--PPKYKAYQYXXXXXXXXXXXXXXXXXXXXXXKGKNGNDGCHWC 308
+GWM+R+ LP + + KY AYQ+ +G N N+ CHWC
Sbjct: 264 HYGWMQRYVLPSSVKYTSKKYLAYQWILLAVASVLAVIGFAVGLSMLFRGVNANERCHWC 323
Query: 309 HYLNCVPTSKWKCN 322
HYL+C+PTS+W C
Sbjct: 324 HYLSCIPTSRWTCG 337
>Os04g0569300 Similar to Membrane protein
Length = 342
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/293 (46%), Positives = 162/293 (55%), Gaps = 4/293 (1%)
Query: 30 DDRKWWPWLVPTVIVACIAVFIVEMYVNNCPKHGSALGGCVAGFLRRFSFQPLRENPLLG 89
+R W+VP V++A +A+F+V MY NNCP +G FLRR SFQPLRENP+LG
Sbjct: 53 QERHHRTWVVPLVVIANVAMFVVVMYYNNCPANGGRRDCVGRSFLRRLSFQPLRENPVLG 112
Query: 90 PSSATLQKMGALDWNKVVHQHQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFV 149
PS+ATL+K GALDW VVH +Q WRL + WLHAGLIHL NM+SLL IGIRLEQQFGF
Sbjct: 113 PSAATLRKYGALDWYGVVHGNQAWRLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFW 172
Query: 150 RIGAIYLLSGFGGSVLSALFLRNNYIXXXXXXXXXXXXXXXXXELIMNWTIYSNKXXXXX 209
++G +YL+SGFGGSVLS LF+ N I ELI NWTIYSN+
Sbjct: 173 KVGLVYLVSGFGGSVLSVLFISRNGITVGASGALFGLLGAMLSELITNWTIYSNRCAAMV 232
Query: 210 XXXXXXXXXXXXXXXPHADNFAHIXXXXXXXXXXXXXXARPQFGWMERHELPQTNQPPKY 269
P DNFAHI +PQFGW E+ ++ KY
Sbjct: 233 NLIIIAAINLALGILPRVDNFAHIGGFATGFLLGFVLLIQPQFGWSEQ----VSSAKSKY 288
Query: 270 KAYQYXXXXXXXXXXXXXXXXXXXXXXKGKNGNDGCHWCHYLNCVPTSKWKCN 322
A+Q KG +GN C WCHYL CVPTS WKC+
Sbjct: 289 NAFQIILLTLSVALLIAGFAAGLVSVFKGVDGNAHCSWCHYLTCVPTSSWKCD 341
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,879,980
Number of extensions: 285520
Number of successful extensions: 718
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 222
Effective length of database: 11,762,187
Effective search space: 2611205514
Effective search space used: 2611205514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)