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Os04g0569300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Membrane protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.35 (0.041) R2 : 0.634
β1 : -4.01 (0.153) R2dD : 0.599 R2D : 0.404
β2 : 1.5 (0.128) R2dC : 0.181 R2C : -0.0984
β3 : 1.45 (0.11) R2dE : 0.238 R2E : -0.168
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.908 (0.0893) R2dN8 : 0.117 R2N8 : -0.0391
σ : 0.766
deviance : 270.16
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C
peak time of C : 9.71
E
wheather : temperature
threshold : 19.59
memory length : 314
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14.3
open length of G : 15.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.69 0.766 8.35 -3.88 1.39 1.28 -1.04 0.267 -0.901 9.3 19.8 275 14.2 16.3
264.85 0.758 8.36 -3.99 1.43 1.36 -1.13 -- -0.919 9.66 19.6 310 14.4 15.8
267.23 0.761 8.35 -3.85 1.41 1.32 -- 0.878 -0.867 9.44 19.5 275 14.3 16.1
270.16 0.766 8.35 -4.01 1.5 1.45 -- -- -0.908 9.71 19.59 314 14.3 15.8
300.86 0.808 8.4 -4.11 -- 1.64 -- 0.277 -0.987 -- 19.6 773 15.7 16.5
327.54 0.848 8.32 -3.67 1.03 -- 0.0487 -- -0.69 5.67 -- -- -- --
327.55 0.848 8.32 -3.67 1.03 -- -- -- -0.69 5.69 -- -- -- --
295.71 0.801 8.39 -4.06 -- 1.53 -- -- -0.91 -- 19.4 777 16.4 14.3
671.81 1.21 8.23 -- 1.21 1.07 -- -- -0.316 10.2 12.82 274 15.8 14.6
383.12 0.915 8.34 -3.64 -- -- -- -- -0.665 -- -- -- -- --
682.22 1.22 8.23 -- 0.977 -- -- -- -0.282 5.86 -- -- -- --
672.67 1.21 8.26 -- -- 1.02 -- -- -0.332 -- 14.2 1038 12.3 18.6
731.78 1.26 8.25 -- -- -- -- -- -0.262 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 270.00 temperature 20 270 > th dose independent rect. 14 17
6 272.05 wind 1 43200 < th dose dependent rect. 2 1
10 273.45 temperature 20 270 > th dose independent rect. 24 8
12 273.83 temperature 20 270 > th dose independent rect. 24 22
19 274.44 temperature 20 270 > th dose independent rect. 11 21
22 274.98 temperature 20 270 > th dose independent sin 9 NA
31 275.67 temperature 20 720 > th dose independent sin 14 NA
49 276.39 temperature 10 43200 > th dose independent rect. 10 7
52 276.48 wind 3 43200 < th dose independent rect. 13 1
56 276.63 wind 3 43200 > th dose independent rect. 13 1
59 276.65 wind 1 43200 < th dose independent rect. 2 1
61 276.72 temperature 20 720 > th dose independent rect. 10 16
71 276.95 wind 5 43200 < th dose dependent rect. 13 1
76 277.20 temperature 10 720 > th dose dependent rect. 16 16
78 277.25 wind 1 43200 > th dose independent rect. 2 1
96 277.75 wind 3 43200 > th dose independent rect. 12 3
110 278.05 wind 3 43200 < th dose independent rect. 12 3
112 278.11 temperature 20 720 > th dose independent rect. 10 13
135 278.50 wind 3 43200 > th dose independent rect. 11 5
139 278.56 wind 3 43200 < th dose independent rect. 11 5
159 278.95 temperature 10 720 > th dose dependent sin 12 NA
161 278.96 wind 5 43200 < th dose dependent rect. 10 7
164 279.00 temperature 20 720 > th dose independent rect. 19 17
171 279.09 temperature 20 270 < th dose independent rect. 11 21
204 279.67 wind 1 43200 < th dose dependent rect. 9 2
208 279.68 temperature 10 720 > th dose dependent rect. 18 18
215 279.74 wind 1 43200 > th dose independent rect. 8 3
228 279.93 humidity 90 14400 < th dose independent rect. 22 5
251 280.09 wind 1 43200 > th dose dependent rect. 15 1
270 280.27 radiation 40 14400 < th dose independent rect. 15 1
301 280.61 wind 1 43200 < th dose dependent rect. 11 1
304 280.64 wind 5 43200 < th dose dependent rect. 9 11
306 280.65 radiation 40 14400 < th dose independent rect. 15 5
319 280.70 radiation 20 14400 < th dose dependent rect. 24 5
346 280.95 humidity 90 14400 < th dose independent rect. 21 10
354 281.00 wind 1 43200 > th dose dependent rect. 13 3
380 281.37 wind 3 43200 > th dose independent rect. 10 11
384 281.39 wind 1 43200 < th dose independent rect. 8 4
405 281.58 wind 1 43200 < th dose independent rect. 9 2
413 281.64 wind 3 43200 < th dose independent rect. 9 12
435 281.76 wind 5 43200 < th dose dependent sin 21 NA
463 281.92 radiation 40 14400 < th dose independent rect. 15 13
501 282.12 wind 3 43200 > th dose independent sin 21 NA
504 282.13 humidity 90 14400 > th dose dependent rect. 5 1
525 282.22 temperature 20 720 > th dose independent rect. 21 2
535 282.27 radiation 1 14400 < th dose independent rect. 18 11
551 282.37 wind 3 43200 < th dose independent sin 21 NA
568 282.47 radiation 10 14400 < th dose dependent rect. 2 3
592 282.55 humidity 90 14400 > th dose independent rect. 22 5
665 282.93 wind 5 43200 > th dose independent rect. 15 1
682 283.01 humidity 90 14400 > th dose independent rect. 21 10
716 283.15 wind 3 43200 > th dose independent rect. 11 17
781 283.43 humidity 90 14400 < th dose independent sin 11 NA
832 283.61 atmosphere 995 43200 < th dose independent rect. 13 6
856 283.69 temperature 20 270 < th dose independent sin 11 NA
871 283.74 atmosphere 995 43200 > th dose independent rect. 12 7
890 283.78 atmosphere 995 43200 > th dose independent rect. 13 5
897 283.80 humidity 90 14400 > th dose independent rect. 24 9
905 283.82 wind 3 43200 < th dose independent rect. 11 17
908 283.83 wind 1 43200 > th dose dependent rect. 9 10
924 283.86 temperature 15 270 > th dose dependent rect. 1 6
966 283.99 wind 1 43200 > th dose dependent rect. 13 14
991 284.06 humidity 90 14400 > th dose independent rect. 17 13