Os01g0147300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rhomboid-like protein family protein.
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Os01g0147300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rhomboid-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.73 | 0.647 | 6.84 | -0.429 | 3.85 | 0.163 | -1.26 | 9.83 | -0.194 | 7 | 30.6 | 1215 | -- | -- |
| 194.59 | 0.65 | 7.03 | -2.03 | 3.86 | 1.19 | -0.843 | -- | -0.251 | 6.99 | 30.5 | 1214 | -- | -- |
| 193.85 | 0.648 | 6.85 | -0.485 | 3.85 | 0.181 | -- | 9.7 | -0.194 | 7.01 | 30.7 | 1202 | -- | -- |
| 197.53 | 0.655 | 7.03 | -2.07 | 3.88 | 1.27 | -- | -- | -0.188 | 7.01 | 30.7 | 1202 | -- | -- |
| 966.72 | 1.45 | 6.91 | -0.248 | -- | 0.146 | -- | 10.3 | -0.112 | -- | 30.62 | 1341 | -- | -- |
| 271.89 | 0.773 | 7.09 | -1.73 | 3.89 | -- | -1.2 | -- | -0.437 | 6.82 | -- | -- | -- | -- |
| 275.57 | 0.777 | 7.08 | -1.75 | 3.89 | -- | -- | -- | -0.434 | 6.82 | -- | -- | -- | -- |
| 980.02 | 1.46 | 7.11 | -2.03 | -- | 1.32 | -- | -- | -0.1 | -- | 30.5 | 1337 | -- | -- |
| 307.35 | 0.817 | 6.98 | -- | 3.9 | 1.07 | -- | -- | -0.0101 | 7.03 | 30.75 | 1177 | -- | -- |
| 1068.06 | 1.53 | 7.17 | -1.67 | -- | -- | -- | -- | -0.358 | -- | -- | -- | -- | -- |
| 356.43 | 0.883 | 7.04 | -- | 3.87 | -- | -- | -- | -0.238 | 6.85 | -- | -- | -- | -- |
| 1084.07 | 1.53 | 7.07 | -- | -- | 1.05 | -- | -- | 0.0555 | -- | 31.22 | 1313 | -- | -- |
| 1141.27 | 1.58 | 7.12 | -- | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 3 | 194.47 | temperature | 30 | 1440 | > th | dose dependent | sin | 14 | NA |
| 8 | 194.92 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 23 | 194.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 56 | 195.17 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 57 | 195.18 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 76 | 195.32 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 79 | 195.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 80 | 195.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 7 |
| 83 | 195.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 94 | 195.42 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 113 | 195.44 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 190 | 195.75 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 193 | 195.85 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 320 | 196.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 353 | 197.08 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 374 | 197.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 397 | 197.89 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 403 | 198.02 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 444 | 198.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 446 | 198.43 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 452 | 198.69 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 482 | 199.34 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 487 | 199.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 517 | 199.86 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 520 | 199.91 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 535 | 199.98 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 604 | 200.22 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 607 | 200.27 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 608 | 200.31 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 647 | 201.00 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 657 | 201.18 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 660 | 201.20 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 674 | 201.22 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 678 | 201.26 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 683 | 201.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 686 | 201.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 687 | 201.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 688 | 201.48 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 12 |
| 709 | 201.69 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 731 | 201.82 | radiation | 10 | 1440 | > th | dose independent | sin | 0 | NA |
| 757 | 202.19 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 759 | 202.23 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 766 | 202.38 | radiation | 10 | 1440 | < th | dose dependent | sin | 15 | NA |
| 769 | 202.43 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 785 | 202.46 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 789 | 202.52 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 795 | 202.58 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 807 | 202.68 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 808 | 202.69 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 850 | 202.86 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 864 | 203.02 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 878 | 203.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 897 | 203.17 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 11 |
| 934 | 203.31 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 942 | 203.33 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 945 | 203.38 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 950 | 203.39 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 987 | 203.54 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |