BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0147300 Os01g0147300|J075148G02
(121 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G29050.1 | chr2:12478245-12480121 FORWARD LENGTH=390 86 5e-18
AT3G53780.2 | chr3:19924729-19926648 REVERSE LENGTH=395 68 1e-12
AT1G52580.1 | chr1:19587637-19588958 FORWARD LENGTH=310 65 8e-12
AT5G07250.1 | chr5:2274437-2275935 REVERSE LENGTH=347 58 1e-09
AT4G23070.1 | chr4:12090690-12092077 REVERSE LENGTH=314 50 3e-07
AT1G12750.1 | chr1:4345100-4346688 REVERSE LENGTH=308 47 2e-06
AT1G63120.1 | chr1:23409054-23410725 REVERSE LENGTH=318 47 2e-06
>AT2G29050.1 | chr2:12478245-12480121 FORWARD LENGTH=390
Length = 389
Score = 85.5 bits (210), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 53/99 (53%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
EL+TNWTIY NKF PHVDNFAH +RPQ+
Sbjct: 209 ELLTNWTIYANKFAALLTLIFIIAINLAVGILPHVDNFAHLGGFTSGFLLGFVFLIRPQY 268
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILISG 121
GY NQ+N+P G + KSK+K YQ +LW+ + ++LI+G
Sbjct: 269 GYFNQRNNPRGYAAPSAKSKHKPYQYVLWITSLVLLIAG 307
>AT3G53780.2 | chr3:19924729-19926648 REVERSE LENGTH=395
Length = 394
Score = 67.8 bits (164), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
E+ NWTIY NK P VDNFAH +RP +
Sbjct: 219 EIFINWTIYSNKVVTIVTLVLIVAVNLGLGVLPGVDNFAHIGGFATGFLLGFVLLIRPHY 278
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILISG 121
G+INQ+N P G ++K YQ ILW I+ LIL++G
Sbjct: 279 GWINQRNGP-----GAKPHRFKIYQGILWTISLLILVAG 312
>AT1G52580.1 | chr1:19587637-19588958 FORWARD LENGTH=310
Length = 309
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 45/99 (45%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
ELITNWTIYENK P VDN AH +RPQ+
Sbjct: 188 ELITNWTIYENKCTALMTLILIIVLNLSVGFLPRVDNSAHFGGFLAGFFLGFVLLLRPQY 247
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILISG 121
GY+N K P G M KSK+K YQ I + IL++G
Sbjct: 248 GYVNPKYIPPGYDMKHKKSKHKCYQHIFRFTSLAILLAG 286
>AT5G07250.1 | chr5:2274437-2275935 REVERSE LENGTH=347
Length = 346
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
EL TNWTIY NK PHVDNFAH RPQF
Sbjct: 214 ELFTNWTIYSNKIAALLTLLFVILINLAIGILPHVDNFAHVGGFVTGFLLGFILLARPQF 273
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQ-----------IILWVIATLILISG 121
++ +++ P G P+ + KYKTYQ I +V+A L+L G
Sbjct: 274 KWLAREHMPQGTPL---RYKYKTYQYLLWLLSLVLLIAGFVVALLMLFRG 320
>AT4G23070.1 | chr4:12090690-12092077 REVERSE LENGTH=314
Length = 313
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
EL+ NWT Y+NK P VDNFAH + PQF
Sbjct: 184 ELLINWTTYDNKGVAIVMLLVIVGVNLGLGTLPPVDNFAHIGGFFGGFLLGFLLLIHPQF 243
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILISG 121
+ ++N +P K KY T Q++L ++A+++ ++G
Sbjct: 244 EW--EENQVSLMPGTIVKPKYNTCQLVLCIVASIVFVAG 280
>AT1G12750.1 | chr1:4345100-4346688 REVERSE LENGTH=308
Length = 307
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
EL+TNWTIY++K P VDNFAH ++PQ
Sbjct: 177 ELLTNWTIYKSKLCALLSFLFIIAINLAIGLLPWVDNFAHIGGLLTGFCLGFILLMQPQS 236
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILISG 121
G+ +NS +SKY Q +L+ +A +++++G
Sbjct: 237 GWEEFRNSS--QYGARARSKYNPCQYVLFFVAAVLVVAG 273
>AT1G63120.1 | chr1:23409054-23410725 REVERSE LENGTH=318
Length = 317
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
EL+TNWTIY NK P VDNFAH VRPQ+
Sbjct: 190 ELLTNWTIYANKAAALITLLFIIAINLALGMLPRVDNFAHIGGFLTGFCLGFVLLVRPQY 249
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQ 107
G+ + + TK KY YQ
Sbjct: 250 GWEASRTNT-----SRTKRKYSMYQ 269
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,441,319
Number of extensions: 33107
Number of successful extensions: 59
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 7
Length of query: 121
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 35
Effective length of database: 8,748,793
Effective search space: 306207755
Effective search space used: 306207755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 105 (45.1 bits)