BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0147300 Os01g0147300|J075148G02
(121 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0147300 Rhomboid-like protein family protein 130 2e-31
Os11g0704800 Similar to Membrane protein 71 2e-13
Os09g0525900 Rhomboid-like protein family protein 64 2e-11
Os08g0546700 Rhomboid-like protein family protein 63 6e-11
>Os01g0147300 Rhomboid-like protein family protein
Length = 121
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 70/121 (57%)
Query: 1 MVSNIXXXXXXXXXXXXXXXXXELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNF 60
MVSNI ELITNWTIYENKF PHVDNF
Sbjct: 1 MVSNISVGASGALFGLLGSMLSELITNWTIYENKFAALLTLVIIILINLAVGILPHVDNF 60
Query: 61 AHXXXXXXXXXXXXXXXVRPQFGYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILIS 120
AH VRPQFGYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILIS
Sbjct: 61 AHLGGFTSGFFLGFVLLVRPQFGYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILIS 120
Query: 121 G 121
G
Sbjct: 121 G 121
>Os11g0704800 Similar to Membrane protein
Length = 374
Score = 70.9 bits (172), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 46/99 (46%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
ELITNW++Y NK P VDNFAH +RPQF
Sbjct: 194 ELITNWSLYANKVAALLTLVFVIVVNLALGILPRVDNFAHIGGLISGFLLGFVMFIRPQF 253
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILISG 121
+INQ+ G K K+KTYQ ILW+ A ++LI G
Sbjct: 254 AWINQRRVAPGQQPAPVKRKHKTYQYILWLAAAIMLIVG 292
>Os09g0525900 Rhomboid-like protein family protein
Length = 323
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
ELI NWTIY NK PH DNFAH RPQF
Sbjct: 193 ELIMNWTIYSNKAAAIITLLFIIAINLAIGILPHADNFAHIGGFVTGFLLGFVLLARPQF 252
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILISG 121
G++ + LP KYK YQ +LWV+A ++L+ G
Sbjct: 253 GWMERHE----LPQTNQPPKYKAYQYVLWVVAFVLLLVG 287
>Os08g0546700 Rhomboid-like protein family protein
Length = 323
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 23 ELITNWTIYENKFXXXXXXXXXXXXXXXXXXXPHVDNFAHXXXXXXXXXXXXXXXVRPQF 82
ELI NWTIY NK PH DNFAH RPQF
Sbjct: 193 ELIMNWTIYSNKAAAIITLLFIIAINLAIGILPHADNFAHIGGFVTGFLLGFVLLARPQF 252
Query: 83 GYINQKNSPLGLPMGTTKSKYKTYQIILWVIATLILISG 121
G++ + LP KY+ YQ +LW +A +L+ G
Sbjct: 253 GWMERHE----LPQTNQPRKYRAYQYVLWAVALFLLLVG 287
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,067,795
Number of extensions: 44947
Number of successful extensions: 81
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 4
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)