BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0446700 Os04g0446700|AK073019
(272 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0446700 Leucine-rich repeat 2 containing protein 521 e-148
Os06g0204700 129 2e-30
Os08g0344750 99 2e-21
Os12g0127400 Cyclin-like F-box domain containing protein 99 3e-21
Os07g0442000 Cyclin-like F-box domain containing protein 93 2e-19
Os07g0163200 90 2e-18
Os01g0553400 Cyclin-like F-box domain containing protein 89 3e-18
Os11g0532600 Leucine-rich repeat 2 containing protein 86 2e-17
Os07g0161500 79 5e-15
Os06g0713400 Cyclin-like F-box domain containing protein 74 1e-13
Os11g0533800 Cyclin-like F-box domain containing protein 73 3e-13
Os05g0538200 72 3e-13
Os07g0158900 Cyclin-like F-box domain containing protein 69 3e-12
Os03g0722800 Cyclin-like F-box domain containing protein 69 3e-12
>Os04g0446700 Leucine-rich repeat 2 containing protein
Length = 272
Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/272 (94%), Positives = 257/272 (94%)
Query: 1 MWTLRSKISLDGGAVCGSRRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDSILV 60
MWTLRSKISLDGGAVCGSRRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDSILV
Sbjct: 1 MWTLRSKISLDGGAVCGSRRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDSILV 60
Query: 61 DNLNKWVSFAVSARTKHLSFDLVPIRFARCDDRFIFPFELLDSGSICRLQHLQFSFISLQ 120
DNLNKWVSFAVSARTKHLSFDLVPIRFARCDDRFIFPFELLDSGSICRLQHLQFSFISLQ
Sbjct: 61 DNLNKWVSFAVSARTKHLSFDLVPIRFARCDDRFIFPFELLDSGSICRLQHLQFSFISLQ 120
Query: 121 PPSWFGGFPNLRKLELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRVDRPMSHLA 180
PPSWFGGFPNLRKLELNLVHVTRK SMVRCHLKDDLRVDRPMSHLA
Sbjct: 121 PPSWFGGFPNLRKLELNLVHVTRKELENMLCNCCCLEWLSMVRCHLKDDLRVDRPMSHLA 180
Query: 181 YLLISCCVITKIELHATKLSTFIYEGEFVPIVLNHTSKLVNAHIFIFDAIFHHVVASLFH 240
YLLISCCVITKIELHATKLSTFIYEGEFVPIVLNHTSKLVNAHIFIFDAIFHHVVASLFH
Sbjct: 181 YLLISCCVITKIELHATKLSTFIYEGEFVPIVLNHTSKLVNAHIFIFDAIFHHVVASLFH 240
Query: 241 GLPNVHKLTLCIPDLQLEVFPFNNCELKIQFS 272
GLPNVHKLTLCIPDLQLEVFPFNNCELKIQFS
Sbjct: 241 GLPNVHKLTLCIPDLQLEVFPFNNCELKIQFS 272
>Os06g0204700
Length = 892
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 124/252 (49%), Gaps = 43/252 (17%)
Query: 1 MWTLRSKISLDGGAVCGSRRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDSILV 60
+W + K+ DG S RG+ ++ + NV L+ +G+M EA EF
Sbjct: 524 LWKISPKLRFDG-----STMRGEY-MLEKLVGNVNATLKQQRGRMAEALE---EF----- 569
Query: 61 DNLNKWVSFAVSARTKHLSFDLVPIRFARCDDRFIFPFELLDSGSICRLQHLQFSFISLQ 120
R +H DR++FPFELLD + LQ +Q SF+SL+
Sbjct: 570 -------------RDRH--------------DRYMFPFELLDGKAASCLQQIQLSFVSLK 602
Query: 121 PPSWFGGFPNLRKLELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDD-LRVDRPMSHL 179
PP+ F GFP L+KL L+LV V K S+VRC+L DD L+VD +S L
Sbjct: 603 PPTQFSGFPKLKKLSLHLVQVIAKDLQGLLSSCSNLEWLSIVRCNLNDDELKVDCALSRL 662
Query: 180 AYLLISCCVITKIELHATKLSTFIYEGEFVPIVLNHTSKLVNAHI-FIFDAIFHHVVASL 238
YL I+ C I+KIE++A KL TFIYEG +P+ +L A I F D F + + L
Sbjct: 663 LYLRIANCEISKIEMYALKLKTFIYEGAQLPVDPIQAQELEVADIVFKGDITFQYALTVL 722
Query: 239 FHGLPNVHKLTL 250
P+V LT+
Sbjct: 723 PVVFPSVQNLTV 734
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 1 MWTLRSKISLDGGAVCGSRRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDSILV 60
MWT+ + D +CGS ++ Q+FI+NV VLQ ++GK+VEA IK +F+S L
Sbjct: 150 MWTICPTLRFDSSTLCGSNMCSAEQFTQKFIDNVNAVLQQHRGKLVEALEIKIDFNSRLA 209
Query: 61 DNLNKWVS 68
++LN W++
Sbjct: 210 NHLNNWIT 217
>Os08g0344750
Length = 319
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 89/188 (47%), Gaps = 39/188 (20%)
Query: 72 SARTKHLSFDLVPIRFARCDDRFIFPFELLDSGSICRLQHLQFSFISLQPPSWFGGFPNL 131
+RTK+L+FDLVP DR++FPF LLD S+ LQ +Q S+IS +PP F GFP+L
Sbjct: 40 ESRTKNLAFDLVPDILTGSHDRYMFPFHLLDEKSVSGLQSIQLSYISFKPPLGFKGFPSL 99
Query: 132 RKLELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRVDRPMSHLAYLLISCCVITK 191
RKL+LNLVHV R+ S+VRC+L D ++ +SHL Y+ I C T
Sbjct: 100 RKLDLNLVHVNRESLEVMLHSCHNLQWLSLVRCYL--DGKLHLVLSHLRYIKIFQCKTTM 157
Query: 192 IELHATKLSTFIYEGEFVPIVLNHTSKLVNAHIFIFDAIFHHVVASLFHGLPNVHKLTLC 251
A F VA+L G+P V LTL
Sbjct: 158 -------------------------------------AAFQDAVATLLKGIPIVRNLTLH 180
Query: 252 IPDLQLEV 259
+ Q+E
Sbjct: 181 VCFQQIEA 188
>Os12g0127400 Cyclin-like F-box domain containing protein
Length = 358
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 120/253 (47%), Gaps = 15/253 (5%)
Query: 2 WTLRSKISLDGGAVCG--SRRRGQNK-------YCQRFINNVEKVLQNYQGKMVEAFGIK 52
WT + V G ++R+G + +FI V+ +L+ + G MV F +K
Sbjct: 95 WTFHPNLYFGIKTVLGNNAKRKGTSSDLNCRISSANKFIKRVDAILEKHCGTMVNKFAVK 154
Query: 53 FEFDSILVDNLNKWVSFAVSARTKHLSFDLVPIRFARCDDRFIFPFELLDSGSICRLQHL 112
F + +++N WV+FA++++ + + D P + ++ + FP + D + L+ L
Sbjct: 155 FGLSNEHANHVNGWVAFAIASKARVIILDFSP-DWKSHENNYDFPCHIFDKHNGSYLEAL 213
Query: 113 QFSFISLQPPSWFGGFPNLRKLELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRV 172
+ ++L PP F GF NL+ L L+ V + + S+ C+ +L V
Sbjct: 214 RLDSVTLNPPLDFCGFANLKLLALDNVRL--QHLEQLISKCHVLEWLSIQSCNQLHNLHV 271
Query: 173 DRPMSHLAYLLISCCVITKIELHATKLSTFIYEGEFVPIVLNHTSKLVNAHIFIFDAIFH 232
P+ L L I C + ++ELHA L+TF Y+G + LN S + + I +FD
Sbjct: 272 SEPLCRLQCLSIQGCHLQRMELHAPNLTTFEYDGSLALVTLNECSNIKASTIRLFD---E 328
Query: 233 HVVASLFHGLPNV 245
+ ++ G+P+V
Sbjct: 329 KTLQNILTGIPSV 341
>Os07g0442000 Cyclin-like F-box domain containing protein
Length = 496
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 113/252 (44%), Gaps = 9/252 (3%)
Query: 2 WTLRSKISLDGGAVCGSRRRGQN-KYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDSILV 60
W + LD V GS R + + FI+ V +L+ + G V + FE
Sbjct: 94 WIYHPNLYLDTSIVFGSSDRQKRVPSTETFIDTVNFILRTHSGLGVNKLAVMFELRKEHA 153
Query: 61 DNLNKWVSFAVSARTKHLSFDLVPIRFARCDDRFIFPFELLDSGSICRLQHLQFSFISLQ 120
+++ WVSFAV+++ + ++ + P + D + FP L + S LQ LQ ++L
Sbjct: 154 HDIDGWVSFAVTSKARVVTLNFSPYHGSH-DRSYNFPCHLFNGKSGSHLQVLQLDTVTLG 212
Query: 121 P-PSWFGGFPNLRKLELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRVDRPMSHL 179
P P F GF NL L L V V M C +L P+ L
Sbjct: 213 PSPPGFCGFANLTMLTLENVLVLGDLQFLLKCPALEWLTIRM--CSQLHNLYAPEPLPRL 270
Query: 180 AYLLISCCVITKIELHATKLSTFIYEGEF-VPIVLNHTSKLVNAHIF--IFDAIFHHVVA 236
+L + C I KI++HA L+TF Y G F V I L KL A I I D ++ ++
Sbjct: 271 TFLCVQDCAIDKIDVHAPNLTTFKYRGRFKVIIALRECLKLKTASIVSPIEDNLY-YIFT 329
Query: 237 SLFHGLPNVHKL 248
L +GLP+V +L
Sbjct: 330 ELPNGLPHVERL 341
>Os07g0163200
Length = 515
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 120/265 (45%), Gaps = 13/265 (4%)
Query: 19 RRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDSILVDNLNKWVSFAVSARTKHL 78
R G+ + FI V+ +LQ + G VE + ++ ++N WV+FA+ ++TK L
Sbjct: 85 RPEGRKLNAEEFIRRVDAILQQHNGGGVEKIEVIGLLENENAYHINGWVNFAIKSKTKQL 144
Query: 79 SFDLVPIRFARCDDRFIFPFELLDSGSICRLQHLQFSFISLQPPSWFGGFPNLRKLELNL 138
D + D+ + F F++ D+ ++ LQ L+ ISL+PP+ F GF NL++L+L
Sbjct: 145 VLDFRSFHWP-IDEPYNFAFQIFDAANMENLQSLKLGSISLKPPADFKGFQNLKRLKLLD 203
Query: 139 VHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRVDRPMSHLAYLLI-SCCVITKIELHAT 197
V +T + + C L LR + L +L + C + +IEL++
Sbjct: 204 VGITDEDLQLLLSNCNCLEFLGIYCCKLITSLRTTHLSTQLKHLYVYECPCLKEIELNSG 263
Query: 198 KLSTFIYEGEFVPIVLNHTSKLVNAHIFIFD--AIFHHVVASLFHGLPNVHKLTL----- 250
L+T Y G +P+ L N I D ++ L LP + LTL
Sbjct: 264 -LTTLEYIGPLIPLAPPGIYVLTNLRIKSLDISDSLQYIFTELPSTLPRLEMLTLQCREL 322
Query: 251 ---CIPDLQLEVFPFNNCELKIQFS 272
+PD ++ + L++ FS
Sbjct: 323 ERITLPDKPIKFIYLKHLRLELAFS 347
>Os01g0553400 Cyclin-like F-box domain containing protein
Length = 479
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 104/221 (47%), Gaps = 4/221 (1%)
Query: 30 FINNVEKVLQNYQGKMVEAFGIKFEFDSILVDNLNKWVSFAVSARTKHLSFDLVPIRFAR 89
FI+ + +L+ + G V FG+KFE +++ WVSFA++++ + L + P R
Sbjct: 105 FIDTINFILRKHSGLGVSDFGVKFELWKEHARDIDGWVSFAIASKARVLVLNFSPYIGLR 164
Query: 90 CDDRFIFPFELLDSGSICRLQHLQFSFISLQPPSWFGGFPNLRKLELNLVHVTRKXXXXX 149
++ + FP L + + + LQ ++ P F GF NL L L V V
Sbjct: 165 -ENSYSFPCHLFNDRNGSHFKVLQLDTVTFGPTPDFCGFANLTMLTLKHVLVL-DNFQYF 222
Query: 150 XXXXXXXXXXSMVRCHLKDDLRVDRPMSHLAYLLISCCVITKIELHATKLSTFIYEGEF- 208
++ C +L V P+ L +L + C I KIELHA KL+TF Y G F
Sbjct: 223 LPKCPALEWLEILMCSQLHNLHVSEPLPRLEFLRVQGCAINKIELHAPKLTTFEYRGCFK 282
Query: 209 VPIVLNHTSKLVNAHIFI-FDAIFHHVVASLFHGLPNVHKL 248
V I L+ KL A I + +V L +GLP+V +L
Sbjct: 283 VIIALHKCLKLKTASIASHIEDNLEYVFTGLPNGLPHVERL 323
>Os11g0532600 Leucine-rich repeat 2 containing protein
Length = 438
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 6/255 (2%)
Query: 1 MWTLRSKISLDGGAVCGSRRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDS-IL 59
+W + A+ +R + + +F++ V V++++ G V++F IK ++
Sbjct: 24 VWRFYPNLEFTTKALGLKKRIHKVQRRAKFVSCVNTVIRHHAGTGVKSFIIKKNLNNQKY 83
Query: 60 VDNLNKWVSFAVSARTKHLSFDLVPIRFARCDD-RFIFPFELLDSGSICRLQHLQFSFIS 118
L++W+ FAVS+ K L+ DL P RF + ++ FP + ++HL+ F
Sbjct: 84 THYLDRWMYFAVSSGAKELTLDLRPQRFIHYRNIQYNFPSSNFATPMPTSVEHLKLLFCY 143
Query: 119 LQPPSWFGGFPNLRKLELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRVDRPMSH 178
L+P F G NL+ LEL+ V +T++ + +C D LR+ S
Sbjct: 144 LRPSPTFFGLSNLKTLELSFVRITKEDLESLLSYTFSLQELKLSQCPNIDHLRIPDVPSK 203
Query: 179 LAYLLISCCVITKIELHATKLSTFIYEGEFVPIVLNHTSKLVNAHIFIF---DAIFHHVV 235
L YL I C I +E+H L F Y G ++ L F F DAI + +
Sbjct: 204 LNYLDIDLCWIRALEIHIQNLVIFNYHGSVRFRIIQGEGSLFKEARFQFSCGDAI-EYAI 262
Query: 236 ASLFHGLPNVHKLTL 250
+ LPN+ L L
Sbjct: 263 TEMAPALPNLETLFL 277
>Os07g0161500
Length = 481
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 117/251 (46%), Gaps = 19/251 (7%)
Query: 28 QRFINNVEKVLQNYQGKMVEAFGIKFEFDSILVDNLNKWVSFAVSARTKHLSFDL----- 82
Q FI V+ +LQ + G VE IKF + D +++WV FAV+++TK L DL
Sbjct: 81 QNFIRRVDSILQQHSGVGVERMEIKFLLRNARRD-IDRWVKFAVASKTKELILDLSDLTR 139
Query: 83 ---VPIR-FARCDDR---FIFPFELLDSGSI-CRLQHLQFSFISLQPPSWFGGFPNLRKL 134
+P+ F DR + FP +LLD+ + LQ LQ + + L+P + F GF NL++L
Sbjct: 140 FFMLPVMVFHPYLDREGFYEFPCQLLDANNGGSHLQCLQLTSMYLKPAADFTGFLNLKRL 199
Query: 135 ELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRVDRPMSHLAYLLISCC-VITKIE 193
L V++T + + C + + ++ L +L + CC V+ KIE
Sbjct: 200 NLIGVNITDEGVQNLLCNPNVLEFLEISFCRMLTKIHAPHFLNRLKHLQVDCCPVLEKIE 259
Query: 194 LHATKLSTFIYEG-EFVPIVLNHTSKLVNAHI--FIFDAIFHHVVASLFHGLPNVHKLTL 250
++ L+T + G P++ TS L N + F ++V LP V L
Sbjct: 260 MNC-DLATLDFTGSSMTPLIFATTSSLTNVRLKTMPFCTGLDYIVTGFISNLPVVRMLEF 318
Query: 251 CIPDLQLEVFP 261
+ + + + P
Sbjct: 319 HVVEYKKAISP 329
>Os06g0713400 Cyclin-like F-box domain containing protein
Length = 514
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 8/251 (3%)
Query: 1 MWTLRSKISLDGGAVCGSRRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDSILV 60
+WT + DG + +FI+ V ++Q + G + F I+
Sbjct: 87 LWTRYPNLCFDGSKDGPADMDSVKIERMKFIDTVNSIIQQHSGIGLNKFSIRCNLLKDDS 146
Query: 61 DNLNKWVSFAVSARTKHLSFDLVPIRFARCDDR--FIFPFELLDSGSICRLQHLQFSFIS 118
D L++W+ FA +++ K + +L R + + + FP E I +Q L + +S
Sbjct: 147 DILDRWIRFATASKAKIIDMNLCTNRNNKGPTKHLYDFPLEAFGDQDIPFIQCLFLNNVS 206
Query: 119 LQPPSWFGGFPNLRKLELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRVDRPMSH 178
++P S G F LR L L+ V + + C L + ++
Sbjct: 207 IKPHSDIG-FTKLRSLHLHCVQIIGDLSGLLFNCSSLEDL-EVFACLGVTALNIPHQLNK 264
Query: 179 LAYLLISCCVITKIELHATKLSTFIYEGEFVPIVLNHTSKL----VNAHIFIFDAIFHHV 234
L +LLI I +E H LS F Y+G +PI+L+ SKL +N H + + V
Sbjct: 265 LRHLLICNMRIQMLEFHVPGLSHFEYKGTMIPIMLHGCSKLQKATLNFHQTWLEEDNNKV 324
Query: 235 VASLFHGLPNV 245
+ +FHG+P+V
Sbjct: 325 LGHVFHGIPSV 335
>Os11g0533800 Cyclin-like F-box domain containing protein
Length = 474
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 116/255 (45%), Gaps = 6/255 (2%)
Query: 2 WTLRSKISLDGGAVCGSRRRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDS-ILV 60
W L + A+ ++R + +F+ V +++++ G + +F +K ++
Sbjct: 57 WRLYPNLEFTSKALGLNKRVHKQGRRAKFVRCVNTIIRHHAGTGINSFTLKRNLNNHKYA 116
Query: 61 DNLNKWVSFAVSARTKHLSFDLVPIRFARCDD-RFIFPFELLDSGSICRLQHLQFSFISL 119
+++W+ FAV + L+ DL P +A D ++ FP + + ++HL+ F++L
Sbjct: 117 HYIDRWIYFAVRSGANELTIDLSPRWYAHPRDVKYSFPSSNVAAPEPTSIEHLKLCFMNL 176
Query: 120 QPPSWFGGFPNLRKLELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRVDRPMSHL 179
+P F G +L+ L+L LV +T + + +C + + L++ ++ L
Sbjct: 177 RPLPTFSGLRSLKTLDLALVCITTEDLESLLSYTPALQQLKLRQCPMLEYLKITDVLAKL 236
Query: 180 AYLLISCCVITKI-ELHATKLSTF-IYEGEFVPIVLNHTSKLVNAHI--FIFDAIFHHVV 235
Y+ I C+ KI E+HA L Y + IVL+ L AHI + + +
Sbjct: 237 VYIDIVPCLWLKILEIHAQNLVAINTYNICHLKIVLSEALVLKGAHIELVLSSDVIEYAF 296
Query: 236 ASLFHGLPNVHKLTL 250
L +P++ L L
Sbjct: 297 TDLAPLMPDLESLFL 311
>Os05g0538200
Length = 592
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 11/228 (4%)
Query: 29 RFINNVEKVLQNYQGKMVEAFGIKFEFDSILVDNLNKWVSFAVSARTKHLSFDLVPIRFA 88
R+ V+ +L+N+ G V+ F + L+ LN W+ A+S+ + ++ L
Sbjct: 117 RYFTRVDHILKNHSGIGVKRFQLVCGRRK-LICRLNNWLQIAISSGIEEITLSL------ 169
Query: 89 RCDDRFIFPFELLDSGSICRLQHLQFSFISLQPPSWFGGFPNLRKLELNLVHVTRKXXXX 148
+ FP LL GS LQHL+ + +P + G NL KL L+ V +T
Sbjct: 170 --PSEYSFPCSLLSGGSGRSLQHLELVNCAFRPMAGLGCSRNLTKLHLHSVLITDDELAC 227
Query: 149 XXXXXXXXXXXSMVRCHLKDDLRVDRPMSHLAYLLISCCVITKIELHATKLSTFIYEGEF 208
+ C L++ + L+YL + C + IE A LS+ IY G
Sbjct: 228 FLSECFALKHLDLSYCRELVYLKIPCLLEQLSYLNVDLCHLQMIESKAPNLSSLIYSGNL 287
Query: 209 VPIVLNHTSKLVNAHIFIFDAI--FHHVVASLFHGLPNVHKLTLCIPD 254
+ + L +S++ I +D +V+ L + +PN+ LT+ D
Sbjct: 288 IELSLGQSSQVKTLDINFYDKTNFLCYVITKLQNIVPNLESLTIYSDD 335
>Os07g0158900 Cyclin-like F-box domain containing protein
Length = 496
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 14/242 (5%)
Query: 30 FINNVEKVLQNYQGKMVEAFGIKFEFDSILVDNLNKWVSFAVSARTKHLSFDLVPIRFAR 89
FI V +V + G V+ I+ + D+ D++N+W+SF + +TK L+FD R+ R
Sbjct: 81 FIERVSQVFAQHSGLSVQKIAIQGKLDNEHADHINRWLSFVSATKTKDLTFDFKS-RYPR 139
Query: 90 CDDRFIFPFELLDSGSICRLQHLQFSFISLQPPSWFGGFPNLRKLELNLVHVTRKXXXXX 149
+ + FPF+ + L ++ S +SL PP F F NL++L+L ++T +
Sbjct: 140 -EGPYDFPFKFFGAMDSSYLLSMRLSAVSLNPPVDFKAFLNLKRLKLEHTNITDENMQIL 198
Query: 150 XXXXXXXXXXSMVRCHLKDDLRVDRPMSHLAYLLI-SCCVITKIELHATKLSTFIYEGEF 208
+V C L + L +L + SC ++ +IEL+ L+ Y+G
Sbjct: 199 ISNCNALEFLGIVDCGKLTRLSTSHLWNQLKHLHVESCHLLKEIELN-LGLTKLGYKGTL 257
Query: 209 VPIVLNHTSKLVNAHIFIFDA------IFHHVVASLFHGLPNVHKLTLCIPDLQLEVFPF 262
+P+ L N + + A IF ++ ++L H + L+L +L+ + P
Sbjct: 258 IPLSPPGPLLLTNVCMKLQHARSSLGYIFTNLPSTLLH----LETLSLQCSELERAILPE 313
Query: 263 NN 264
N+
Sbjct: 314 NH 315
>Os03g0722800 Cyclin-like F-box domain containing protein
Length = 499
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 116/258 (44%), Gaps = 22/258 (8%)
Query: 20 RRGQNKYCQRFINNVEKVLQNYQGKMVEAFGIKFEFDSILVDNLNKWVSFAVSARTKHLS 79
RR + + +R +N++ + Q + F +KF ++N+WV F R +H++
Sbjct: 103 RRTRTNFARR-VNSLLR--QLCAPPTLNKFVVKFGLRRKHTCHVNRWVGFCSKLRARHIT 159
Query: 80 FDLVP----IRFARCDDRFIFPFEL--LDSGSICRLQHLQFSFISLQPPS-WFGGFPNLR 132
FD P I D+++IF + + S ++ L S++ L + F GF NL+
Sbjct: 160 FDFTPGVKGIFRGLADEKYIFHLHVFSVPDRSPAHIKSLHLSYVWLNTATTGFTGFANLK 219
Query: 133 KLELNLVHVTRKXXXXXXXXXXXXXXXSMVRCHLKDDLRVDRPMSHLAYLLISCCVITKI 192
KL L+ V S + C +L + +P+ L YL + C + K+
Sbjct: 220 KLTLHKVSFLNDFQHLMLSECTALEWLS-ISCSSFTELTLCKPLRRLRYLSLHYCYMEKV 278
Query: 193 ELHATKLSTFIYEGEFVPIVLNHTSKLVNAHI------FIFDAIFHHVVASLFHGLPNVH 246
EL A L++ +P+ L+ + K++ A+I ++ ++ L LP+V
Sbjct: 279 ELEAPNLTSVDLTNRPIPLALSESLKVMEANIKLLHKSVLYGDNLDYICTELPAALPHVQ 338
Query: 247 KL----TLCIPDLQLEVF 260
KL TLCI D +L+ F
Sbjct: 339 KLSITSTLCIYD-ELQSF 355
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.143 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,587,879
Number of extensions: 309712
Number of successful extensions: 962
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 959
Number of HSP's successfully gapped: 15
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)