Os11g0532600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat 2 containing protein.
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Os11g0532600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.45 | 0.191 | 10.1 | 0.314 | 1.5 | -0.273 | -0.481 | 1.35 | -0.135 | 6.7 | 21.1 | 4188 | -- | -- |
| 17.75 | 0.196 | 10.2 | 0.217 | 1.52 | -0.552 | -0.497 | -- | -0.204 | 6.72 | 16.5 | 24323 | -- | -- |
| 16.98 | 0.192 | 10.1 | 0.307 | 1.5 | -0.268 | -- | 1.34 | -0.132 | 6.7 | 21.33 | 4000 | -- | -- |
| 17.85 | 0.197 | 10.2 | 0.329 | 1.48 | -0.699 | -- | -- | -0.172 | 6.74 | 16.88 | 24626 | -- | -- |
| 134.01 | 0.539 | 10.1 | 0.342 | -- | -0.191 | -- | 1.35 | -0.0998 | -- | 21.7 | 7893 | -- | -- |
| 23.47 | 0.227 | 10.2 | -0.256 | 1.49 | -- | -0.416 | -- | -0.348 | 6.73 | -- | -- | -- | -- |
| 23.91 | 0.229 | 10.2 | -0.262 | 1.49 | -- | -- | -- | -0.347 | 6.74 | -- | -- | -- | -- |
| 134.38 | 0.54 | 10.2 | 0.374 | -- | -0.669 | -- | -- | -0.13 | -- | 14.52 | 47520 | -- | -- |
| 19.03 | 0.203 | 10.2 | -- | 1.5 | -0.466 | -- | -- | -0.247 | 6.73 | 14.47 | 43312 | -- | -- |
| 140.39 | 0.554 | 10.2 | -0.228 | -- | -- | -- | -- | -0.318 | -- | -- | -- | -- | -- |
| 25.72 | 0.237 | 10.2 | -- | 1.49 | -- | -- | -- | -0.318 | 6.75 | -- | -- | -- | -- |
| 135.25 | 0.542 | 10.2 | -- | -- | -0.455 | -- | -- | -0.213 | -- | 12.57 | 26646 | -- | -- |
| 141.76 | 0.556 | 10.2 | -- | -- | -- | -- | -- | -0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.55 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 2 | 15.74 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 3 | 15.93 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 4 | 16.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 5 | 16.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 8 | 16.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 20 | 16.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 35 | 16.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 38 | 16.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 42 | 16.35 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 48 | 16.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 52 | 16.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 57 | 16.37 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 58 | 16.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 62 | 16.38 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 66 | 16.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 71 | 16.40 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 72 | 16.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 91 | 16.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 100 | 16.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 111 | 16.44 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 139 | 16.48 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 183 | 16.53 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 188 | 16.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 196 | 16.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 207 | 16.55 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 208 | 16.56 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 210 | 16.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 233 | 16.58 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 259 | 16.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 14 |
| 276 | 16.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 14 |
| 286 | 16.62 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 307 | 16.63 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 309 | 16.63 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 13 |
| 312 | 16.64 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 329 | 16.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 330 | 16.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 362 | 16.66 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 363 | 16.66 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 373 | 16.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 417 | 16.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 18 |
| 423 | 16.69 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 434 | 16.69 | temperature | 20 | 4320 | > th | dose dependent | sin | 21 | NA |
| 454 | 16.70 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 472 | 16.70 | temperature | 20 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 483 | 16.71 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 488 | 16.71 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 500 | 16.71 | temperature | 15 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 518 | 16.72 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 531 | 16.72 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 537 | 16.72 | humidity | 80 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 569 | 16.73 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 570 | 16.73 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 573 | 16.73 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 632 | 16.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 635 | 16.74 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 636 | 16.74 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 667 | 16.74 | atmosphere | 1010 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 681 | 16.74 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 11 |
| 686 | 16.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 691 | 16.75 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 692 | 16.75 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 696 | 16.75 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 712 | 16.75 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 732 | 16.75 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 752 | 16.75 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 15 |
| 773 | 16.76 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 774 | 16.76 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 786 | 16.76 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 833 | 16.77 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 837 | 16.77 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 838 | 16.77 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 839 | 16.77 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 857 | 16.77 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 861 | 16.77 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 908 | 16.77 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 948 | 16.78 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 11 | NA |
| 952 | 16.78 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 11 | NA |
| 978 | 16.78 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 8 |