BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0532600 Os11g0532600|AK060253
(438 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G54820.1 | chr5:22269859-22271777 FORWARD LENGTH=473 59 4e-09
AT3G52680.1 | chr3:19527075-19528838 FORWARD LENGTH=457 55 6e-08
>AT5G54820.1 | chr5:22269859-22271777 FORWARD LENGTH=473
Length = 472
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 144/340 (42%), Gaps = 63/340 (18%)
Query: 87 LDRWMYFAVSSGAKELTLDL-----RPQRFIHYRNIQYNFPSSNFATPMPTSVEHLKLLF 141
+D + +AVS+ K L +DL R I YR+ Y P S ++ T++E LK+
Sbjct: 108 IDALIEYAVSTRVKNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSL---TTLESLKIYG 164
Query: 142 CYLRPSPTFFGLSNLKTLELSFVRITKEDLESLLSYTFSLQELKLSQCPNIDHLRIPDVP 201
C PS F L++L + +VR+ E+L SLLS + SLQ L + C +D I +
Sbjct: 165 CKFDPS-KFVNPVLLRSLSIGWVRL--ENLHSLLSKSPSLQSLSIKNCWGVD---ITSMA 218
Query: 202 SKLNYLDID-------LCWIRALEIH--------------IQNLVIFNYH---GSVRFRI 237
+ L I+ C IH + N++I N + G R
Sbjct: 219 GQFRELVIEHSDFSYMQCAFELPRIHSFKYSGELFEFYFDVVNVIIPNVYLDFGEERVYD 278
Query: 238 IQGEGSLFKEARFQFSCGDAIEYAITEMAPALPNLETLFLIGFSKMVIP-TRDPRHRFHC 296
+Q + S G+ I I ++ A ETL + + VIP P
Sbjct: 279 LQSQSSRIS--------GEVISRIINDLRAA----ETLTVCPYILQVIPECEKPSDLLQP 326
Query: 297 L--KHLQLKMIMLSKKYNNLCLVSFLDAAPFLESL---IVHVCNGSLYYPGKKTD----- 346
+ +HL L+ M +K++N + L+ L+ P LE+L I+ C S + D
Sbjct: 327 METRHLVLRTKMHTKEFNGIILL--LNNCPNLETLGFDILTPCPFSATSSDEGIDPKTYW 384
Query: 347 LRRLEKREPHKNLKFAKMTGFDGERSSIELALHILESSTN 386
+++ + K LK + F G + + + +++ S++
Sbjct: 385 MQKRTCKSLRKTLKVVVIRNFCGSSNELNVLRYLIRSASG 424
>AT3G52680.1 | chr3:19527075-19528838 FORWARD LENGTH=457
Length = 456
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 18 TRKWLRVWRFYPNLEFTTKALGLKKRIHKVQRRAKFVSCVNTVIRHHAGTGVKSFIIK-K 76
+++W +W+ PNLEF + F V H ++SF +K
Sbjct: 50 SKQWRSLWKLVPNLEFDSDDYE--------SEHYTFSEIVCKSFLSHKAPVLESFRLKFV 101
Query: 77 NLNNQKYTHYLDRWMYFAVSSGAKELTLDLRPQRFIHYRNIQYNFPSSNFATPMPTSVEH 136
N N + W+ A S +EL LD P + + + FPSS ++E
Sbjct: 102 NFNPVD----IGLWVGIAFSRHLRELVLDFYPAEL--GKGVTFTFPSSLCTC---NTLET 152
Query: 137 LKLLFCYLRPSPTFFGLSNLKTLELSFVRITKEDLESLLSYTFSLQELKLSQCPNIDHLR 196
LKL+ C L P+ + +L+TL L FVR E S++ L LS CP ++ LR
Sbjct: 153 LKLVLCILVDIPSPVLMKSLRTLHLEFVRYKDES---------SVRNL-LSGCPGLEELR 202
Query: 197 I-PDVPSKLNYLDIDLCWIRALEIHIQN 223
+ S + I++ ++ L IH N
Sbjct: 203 LYRGDDSDIKVFTIEVPSLQRLTIHDNN 230
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.139 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,493,946
Number of extensions: 400746
Number of successful extensions: 1435
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1444
Number of HSP's successfully gapped: 2
Length of query: 438
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 336
Effective length of database: 8,310,137
Effective search space: 2792206032
Effective search space used: 2792206032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)