Os01g0553400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os01g0553400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.31 | 0.333 | 8.81 | -0.318 | 0.385 | 1.16 | 0.252 | -0.452 | -0.179 | 6.47 | 18.8 | 277 | -- | -- |
| 50.44 | 0.331 | 8.8 | -0.247 | 0.38 | 1.18 | 0.346 | -- | -0.159 | 6.44 | 18 | 272 | -- | -- |
| 50.46 | 0.331 | 8.81 | -0.318 | 0.384 | 1.16 | -- | -0.503 | -0.181 | 6.4 | 18.78 | 272 | -- | -- |
| 50.73 | 0.332 | 8.8 | -0.238 | 0.376 | 1.17 | -- | -- | -0.157 | 6.35 | 18 | 269 | -- | -- |
| 55.46 | 0.347 | 8.8 | -0.174 | -- | 0.946 | -- | -0.0542 | -0.109 | -- | 17.36 | 92 | -- | -- |
| 70.69 | 0.394 | 8.76 | 0.0331 | 0.172 | -- | 0.21 | -- | 0.0376 | 12.2 | -- | -- | -- | -- |
| 70.88 | 0.394 | 8.76 | 0.0414 | 0.171 | -- | -- | -- | 0.0387 | 12.2 | -- | -- | -- | -- |
| 54.03 | 0.342 | 8.81 | -0.303 | -- | 1.06 | -- | -- | -0.159 | -- | 12.77 | 1651 | -- | -- |
| 52.02 | 0.336 | 8.8 | -- | 0.35 | 1.04 | -- | -- | -0.119 | 6.55 | 18.8 | 269 | -- | -- |
| 72.72 | 0.398 | 8.77 | 0.0358 | -- | -- | -- | -- | 0.0361 | -- | -- | -- | -- | -- |
| 70.93 | 0.394 | 8.76 | -- | 0.17 | -- | -- | -- | 0.0341 | 12.2 | -- | -- | -- | -- |
| 56.11 | 0.349 | 8.8 | -- | -- | 0.929 | -- | -- | -0.106 | -- | 12.64 | 1636 | -- | -- |
| 72.76 | 0.398 | 8.77 | -- | -- | -- | -- | -- | 0.0321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 2 | 50.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 12 |
| 4 | 50.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 15 | 50.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 20 | 50.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 29 | 50.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 46 | 50.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 69 | 50.25 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 72 | 50.26 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 91 | 50.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 178 | 50.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 230 | 50.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 242 | 50.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 273 | 50.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 274 | 50.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 281 | 50.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 309 | 50.62 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 378 | 50.71 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 411 | 50.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 422 | 50.77 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 423 | 50.77 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 424 | 50.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 519 | 50.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 520 | 50.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 712 | 51.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 934 | 51.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |