Os06g0713400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0713400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Cyclin-like F-box domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.33 | 0.227 | 10.4 | 0.382 | 0.412 | -0.225 | 0.295 | 1.93 | 0.363 | 3.2 | 0.7699 | 1470 | -- | -- |
| 26.75 | 0.241 | 10.4 | 0.496 | 0.426 | -0.273 | 0.284 | -- | 0.383 | 3.59 | 0.51 | 33464 | -- | -- |
| 23.36 | 0.225 | 10.4 | 0.397 | 0.432 | -0.213 | -- | 2.04 | 0.371 | 3.19 | 0.82 | 1520 | -- | -- |
| 27.1 | 0.242 | 10.4 | 0.457 | 0.447 | -0.328 | -- | -- | 0.358 | 3.64 | 0.3684 | 33595 | -- | -- |
| 30.06 | 0.255 | 10.4 | 0.584 | -- | 0.473 | -- | 1.68 | 0.476 | -- | 0.46 | 1874 | -- | -- |
| 28.51 | 0.25 | 10.4 | 0.705 | 0.387 | -- | 0.45 | -- | 0.466 | 3.26 | -- | -- | -- | -- |
| 29.13 | 0.253 | 10.4 | 0.696 | 0.392 | -- | -- | -- | 0.463 | 3.5 | -- | -- | -- | -- |
| 29.25 | 0.252 | 10.4 | 0.752 | -- | 0.35 | -- | -- | 0.484 | -- | 10.94 | 256 | -- | -- |
| 28.2 | 0.247 | 10.4 | -- | 0.419 | -0.587 | -- | -- | 0.256 | 3.89 | 6.891e-05 | 46947 | -- | -- |
| 37.72 | 0.287 | 10.4 | 0.713 | -- | -- | -- | -- | 0.474 | -- | -- | -- | -- | -- |
| 41.91 | 0.303 | 10.4 | -- | 0.406 | -- | -- | -- | 0.386 | 3.49 | -- | -- | -- | -- |
| 36.52 | 0.281 | 10.4 | -- | -- | -0.601 | -- | -- | 0.253 | -- | 6.241e-07 | 47520 | -- | -- |
| 51.12 | 0.334 | 10.4 | -- | -- | -- | -- | -- | 0.395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.81 | radiation | 1 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 2 | 22.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 7 | 23.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 17 | 23.29 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 18 | 23.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 21 |
| 25 | 23.32 | radiation | 1 | 1440 | < th | dose independent | sin | 2 | NA |
| 47 | 23.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 67 | 23.35 | radiation | 1 | 1440 | > th | dose independent | sin | 2 | NA |
| 107 | 23.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 110 | 23.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 113 | 23.57 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 142 | 23.57 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 170 | 23.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 186 | 23.61 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 193 | 23.62 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 245 | 23.65 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 259 | 23.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 281 | 23.71 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 287 | 23.72 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 311 | 23.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 17 |
| 342 | 23.78 | radiation | 1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 396 | 23.92 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 409 | 23.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 416 | 23.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 432 | 23.96 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 481 | 24.05 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 498 | 24.05 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 542 | 24.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 548 | 24.10 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 16 |
| 550 | 24.10 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 571 | 24.16 | temperature | 15 | 270 | > th | dose independent | rect. | 14 | 15 |
| 573 | 24.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 580 | 24.18 | humidity | 90 | 1440 | > th | dose dependent | rect. | 8 | 14 |
| 581 | 24.18 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 582 | 24.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 584 | 24.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 592 | 24.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 600 | 24.22 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 602 | 24.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 603 | 24.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 616 | 24.24 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 15 |
| 624 | 24.25 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 18 |
| 647 | 24.28 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 649 | 24.28 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 670 | 24.29 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 682 | 24.32 | wind | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 700 | 24.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 706 | 24.35 | radiation | 1 | 1440 | > th | dose independent | sin | 13 | NA |
| 713 | 24.35 | radiation | 1 | 90 | > th | dose dependent | sin | 4 | NA |
| 719 | 24.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 734 | 24.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 742 | 24.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 755 | 24.39 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 778 | 24.41 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 797 | 24.42 | temperature | 15 | 270 | > th | dose independent | rect. | 16 | 23 |
| 800 | 24.42 | humidity | 80 | 720 | > th | dose dependent | rect. | 7 | 10 |
| 811 | 24.43 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 860 | 24.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 868 | 24.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 869 | 24.45 | radiation | 40 | 90 | < th | dose dependent | sin | 4 | NA |
| 882 | 24.46 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 885 | 24.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 886 | 24.47 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 889 | 24.47 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 15 |
| 892 | 24.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 893 | 24.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 904 | 24.48 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 916 | 24.49 | radiation | 40 | 270 | < th | dose dependent | sin | 7 | NA |
| 931 | 24.50 | radiation | 1 | 270 | > th | dose dependent | sin | 8 | NA |
| 933 | 24.50 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 8 |
| 944 | 24.51 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 965 | 24.52 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 16 |
| 995 | 24.53 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 996 | 24.54 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |