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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0446700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine-rich repeat 2 containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.96 (0.0369) R2 : 0.0118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.181 (0.0778) R2dN8 : 0.0152 R2N8 : 0.0118
σ : 0.696
deviance : 222.04
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.86 0.684 2.95 -0.0908 0.0566 0.826 0.804 -1.34 0.243 9.58 93.89 358 -- --
212.69 0.679 2.94 -0.091 0.0407 1.02 0.593 -- 0.248 9.71 94.47 387 -- --
213.76 0.681 2.94 -0.0458 0.0875 0.974 -- -0.941 0.245 9 94.55 362 -- --
213.57 0.681 2.94 -0.0856 0.107 0.949 -- -- 0.225 5.71 94.57 387 -- --
213.79 0.681 2.94 -0.0732 -- 0.989 -- -0.518 0.24 -- 94.37 387 -- --
218.62 0.693 2.95 -0.097 0.208 -- 0.562 -- 0.17 7.83 -- -- -- --
219.18 0.693 2.95 -0.0854 0.228 -- -- -- 0.168 6.51 -- -- -- --
213.98 0.681 2.94 -0.0923 -- 1.02 -- -- 0.24 -- 94.39 387 -- --
213.77 0.681 2.94 -- 0.104 0.955 -- -- 0.236 5.63 94.6 387 -- --
221.87 0.696 2.96 -0.0798 -- -- -- -- 0.173 -- -- -- -- --
219.37 0.693 2.95 -- 0.226 -- -- -- 0.177 6.53 -- -- -- --
214.2 0.682 2.94 -- -- 1.02 -- -- 0.249 -- 94.44 387 -- --
222.04 0.696 2.96 -- -- -- -- -- 0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.72 temperature 20.0 10 < th dose independent rect. 8 7
3 202.82 temperature 20.0 30 < th dose dependent rect. 7 7
5 202.82 temperature 20.0 90 < th dose dependent rect. 7 12
7 202.85 temperature 20.0 90 < th dose dependent rect. 7 5
18 202.97 temperature 20.0 90 < th dose independent rect. 7 11
47 203.04 temperature 20.0 90 < th dose dependent rect. 7 2
71 203.12 wind 5.0 10 > th dose independent rect. 8 1
73 203.12 wind 5.0 10 > th dose dependent rect. 8 1
168 207.15 wind 3.0 90 > th dose dependent rect. 6 1
188 207.96 radiation 10.0 90 < th dose independent rect. 4 6
190 208.08 atmosphere 1000.0 90 > th dose dependent rect. 4 4
191 208.09 atmosphere 1000.0 270 > th dose dependent rect. 4 1
192 208.15 wind 3.0 90 > th dose independent rect. 6 1
195 208.25 atmosphere 1005.0 90 > th dose independent rect. 4 4
197 208.32 radiation 20.0 90 < th dose dependent rect. 4 6
200 208.38 humidity 80.0 90 < th dose dependent rect. 6 1
211 208.76 atmosphere 1005.0 270 > th dose independent rect. 4 1
217 208.86 radiation 10.0 90 < th dose independent rect. 7 1
220 208.95 precipitation 0.1 270 < th dose independent rect. 5 23
222 208.95 precipitation 0.1 270 < th dose dependent rect. 5 23
235 209.11 wind 5.0 10 > th dose independent rect. 24 9
267 209.55 humidity 80.0 90 < th dose independent rect. 6 1
278 209.71 radiation 10.0 90 < th dose independent rect. 6 4
289 209.81 temperature 25.0 90 < th dose independent rect. 4 4
298 209.87 wind 5.0 10 > th dose dependent rect. 24 9
307 209.96 atmosphere 1005.0 10 > th dose dependent rect. 7 1
310 209.98 humidity 70.0 90 > th dose dependent rect. 4 7
321 210.10 wind 9.0 1440 < th dose independent rect. 5 4
322 210.10 temperature 10.0 1440 > th dose independent rect. 5 4
325 210.10 humidity 50.0 1440 > th dose independent rect. 5 4
327 210.10 atmosphere 995.0 1440 > th dose independent rect. 5 4
328 210.10 atmosphere 1015.0 1440 < th dose independent rect. 5 4
329 210.10 temperature 10.0 1440 > th dose independent rect. 9 20
344 210.16 atmosphere 1010.0 90 < th dose independent rect. 4 5
346 210.18 humidity 70.0 90 > th dose independent rect. 4 4
364 210.28 temperature 10.0 90 > th dose dependent rect. 8 20
372 210.32 wind 7.0 90 < th dose independent rect. 4 4
374 210.32 temperature 10.0 90 > th dose independent rect. 4 4
377 210.32 humidity 50.0 90 > th dose independent rect. 4 4
385 210.32 temperature 10.0 90 > th dose independent rect. 8 20
393 210.36 radiation 1.0 270 < th dose dependent rect. 4 1
394 210.37 radiation 1.0 270 < th dose independent rect. 4 1
400 210.37 temperature 30.0 90 < th dose dependent rect. 4 12
401 210.38 precipitation 0.1 90 < th dose independent rect. 8 20
404 210.38 precipitation 0.1 90 < th dose dependent rect. 8 20
406 210.39 precipitation 0.1 90 < th dose independent rect. 4 4
411 210.39 precipitation 0.1 90 < th dose dependent rect. 4 4
413 210.40 wind 9.0 270 < th dose independent rect. 4 1
414 210.40 temperature 10.0 270 > th dose independent rect. 4 1
416 210.40 temperature 30.0 270 < th dose independent rect. 4 1
417 210.40 humidity 50.0 270 > th dose independent rect. 4 1
421 210.40 atmosphere 1010.0 270 < th dose independent rect. 4 1
423 210.40 radiation 1.0 720 > th dose independent rect. 16 1
427 210.40 temperature 10.0 270 > th dose independent rect. 5 23
434 210.47 wind 9.0 90 < th dose independent rect. 8 20
450 210.56 radiation 10.0 90 < th dose dependent rect. 8 2
453 210.58 temperature 25.0 90 < th dose independent rect. 4 7
477 210.65 temperature 30.0 90 < th dose dependent rect. 4 4
480 210.66 precipitation 0.1 270 < th dose independent rect. 4 1
484 210.66 precipitation 0.1 270 < th dose dependent rect. 4 1
512 210.74 radiation 40.0 4320 < th dose dependent rect. 2 3
513 210.74 wind 9.0 90 < th dose dependent rect. 4 4
519 210.76 wind 9.0 270 < th dose dependent rect. 4 1
524 210.77 radiation 20.0 90 < th dose dependent rect. 4 21
549 210.87 temperature 30.0 270 < th dose dependent rect. 4 1
552 210.89 temperature 25.0 90 < th dose independent rect. 4 12
553 210.89 wind 9.0 270 < th dose independent rect. 5 23
601 211.05 radiation 40.0 4320 < th dose dependent rect. 24 5
625 211.10 temperature 10.0 270 > th dose dependent rect. 4 1
633 211.12 radiation 40.0 30 < th dose independent rect. 10 18
634 211.12 atmosphere 995.0 90 > th dose independent rect. 8 20
635 211.12 atmosphere 1015.0 90 < th dose independent rect. 8 20
637 211.13 radiation 1.0 1440 < th dose independent rect. 2 3
641 211.14 radiation 10.0 90 < th dose independent rect. 4 21
656 211.18 temperature 30.0 90 < th dose dependent rect. 4 7
687 211.25 temperature 10.0 90 > th dose dependent rect. 4 4
696 211.27 atmosphere 1005.0 10 > th dose independent rect. 7 1
746 211.35 radiation 30.0 10 < th dose dependent rect. 7 1
753 211.36 humidity 70.0 90 > th dose dependent rect. 4 21
787 211.41 humidity 50.0 270 > th dose dependent rect. 4 1
802 211.46 precipitation 0.1 270 < th dose independent rect. 16 11
806 211.46 precipitation 0.1 270 < th dose dependent rect. 16 11
830 211.50 radiation 20.0 90 < th dose independent rect. 19 14
840 211.52 wind 1.0 90 > th dose independent rect. 8 20
843 211.53 humidity 50.0 90 > th dose independent rect. 9 19
882 211.58 humidity 80.0 270 < th dose dependent rect. 4 3
886 211.59 radiation 1.0 1440 > th dose independent rect. 10 3
903 211.60 radiation 40.0 4320 < th dose dependent rect. 22 7
907 211.61 radiation 40.0 90 < th dose dependent rect. 15 13
917 211.62 wind 9.0 90 < th dose dependent rect. 17 11
939 211.67 humidity 80.0 270 < th dose independent rect. 4 3
955 211.69 humidity 90.0 720 > th dose dependent rect. 20 1
965 211.70 radiation 40.0 30 < th dose dependent rect. 10 18
994 211.75 wind 1.0 90 > th dose independent rect. 1 12