BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0401000 Os04g0401000|AK106153
(210 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0401000 Heavy metal transport/detoxification protein d... 155 2e-38
Os04g0400000 Heavy metal transport/detoxification protein d... 92 2e-19
Os04g0400500 Heavy metal transport/detoxification protein d... 89 3e-18
Os04g0400800 Heavy metal transport/detoxification protein d... 87 7e-18
Os11g0629100 Heavy metal transport/detoxification protein d... 75 4e-14
AK105937 74 8e-14
Os04g0400700 73 1e-13
Os03g0751600 Heavy metal transport/detoxification protein d... 73 2e-13
Os07g0606900 Heavy metal transport/detoxification protein d... 70 1e-12
Os03g0412300 Heavy metal transport/detoxification protein d... 65 4e-11
Os04g0400600 Heavy metal transport/detoxification protein d... 64 6e-11
>Os04g0401000 Heavy metal transport/detoxification protein domain containing
protein
Length = 210
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW
Sbjct: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
Query: 61 CKAGKIIKEILIVDVW 76
CKAGKIIKEILIVDVW
Sbjct: 61 CKAGKIIKEILIVDVW 76
>Os04g0400000 Heavy metal transport/detoxification protein domain containing
protein
Length = 215
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 3 ILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIWCK 62
ILVI VDL+CCRC AKI KVL CL+EEYCIEK E++ K+++VIVRGKFD L KI CK
Sbjct: 5 ILVITVDLKCCRCRAKITKVLDCLKEEYCIEKTEFEEKDDKVIVRGKFDAGSLRNKICCK 64
Query: 63 A-GKIIKEILIVDVW 76
A GK++K+I VD W
Sbjct: 65 AGGKVVKDIKTVDAW 79
>Os04g0400500 Heavy metal transport/detoxification protein domain containing
protein
Length = 213
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 3 ILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIWCK 62
ILVI VDL+CCRC AKI KVL CL+ EYCIEK E++ K+++VIVRGKFD L KI CK
Sbjct: 11 ILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDAGCLRNKICCK 70
Query: 63 A-GKIIKEILIVDVW 76
A GK++K+I VD W
Sbjct: 71 AGGKVVKDIKTVDAW 85
>Os04g0400800 Heavy metal transport/detoxification protein domain containing
protein
Length = 282
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
MGILVI DL+CCRC K+ K+L L ++Y IEK EY+ K++RVIVRG F +KL IW
Sbjct: 1 MGILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIW 60
Query: 61 CKAG-KIIKEILIVDVW 76
CKAG K+I++I +VDVW
Sbjct: 61 CKAGRKLIRDIAVVDVW 77
>Os11g0629100 Heavy metal transport/detoxification protein domain containing
protein
Length = 306
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 52/75 (69%)
Query: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
+ L++ VDL C +C KIRK+L L+++ I + YD KNN V++ G FDP++LC +I
Sbjct: 5 ISTLILKVDLACHKCYNKIRKILCNLQDQERITTISYDTKNNIVVIAGTFDPQRLCCRIR 64
Query: 61 CKAGKIIKEILIVDV 75
CK GKIIK+I IVD
Sbjct: 65 CKGGKIIKDIHIVDA 79
>AK105937
Length = 258
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 4 LVILVDLQCCRCDAKIRKVLGCLEE--EYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIWC 61
+++ VDL+C RC AKI +VL + + E+ I+ +E+DVK+N+VIV G FDP+KL K+ C
Sbjct: 7 IIVKVDLECERCYAKIDRVLTRIRDKGEFVIDDIEFDVKHNKVIVSGPFDPDKLADKLCC 66
Query: 62 KAGKIIKEILIVDV 75
KA KIIKEI IVD+
Sbjct: 67 KACKIIKEIEIVDL 80
>Os04g0400700
Length = 247
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
Query: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
M ILVI V++QCCRC KI K+L CL ++CIEK+EY+ +VIVRG F E+L K IW
Sbjct: 1 MAILVITVNMQCCRCKEKIDKILNCLRCKHCIEKIEYE--GEKVIVRGGFCAEELRKCIW 58
Query: 61 CKAG-KIIKEILIVDVW 76
KAG K+I I+IV++W
Sbjct: 59 RKAGCKVIVSIVIVELW 75
>Os03g0751600 Heavy metal transport/detoxification protein domain containing
protein
Length = 237
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 4 LVILVDLQCCRCDAKIRKVLGCLEE--EYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIWC 61
+++ VDL+C RC AKI +VL + + E+ I+ +E+DVK+N+VIV G FDP+KL K+ C
Sbjct: 7 IIVKVDLECERCYAKIDRVLTRIRDKGEFVIDDIEFDVKHNKVIVSGPFDPDKLADKLCC 66
Query: 62 KAGKIIKEILIVDV 75
KA KIIKEI IVD+
Sbjct: 67 KACKIIKEIEIVDL 80
>Os07g0606900 Heavy metal transport/detoxification protein domain containing
protein
Length = 366
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 52/70 (74%)
Query: 3 ILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIWCK 62
+V+ VDL+C RC KIR+VL ++++ I+ + YD KNN V+V G FD +K+CKK+ CK
Sbjct: 65 TVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGPFDADKVCKKLCCK 124
Query: 63 AGKIIKEILI 72
AG+IIK++ +
Sbjct: 125 AGRIIKDMQV 134
>Os03g0412300 Heavy metal transport/detoxification protein domain containing
protein
Length = 248
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
M +V++VDL+C RC KIR+VL L+++ I+ + YD KNN V V G FD +++ ++
Sbjct: 5 MSTIVMMVDLECDRCYRKIRRVLCKLQDKASIKAISYDEKNNTVTVAGPFDADEVSDRLC 64
Query: 61 CKAGKIIKEILIV 73
AGK+I +I +V
Sbjct: 65 SSAGKVITDIRVV 77
>Os04g0400600 Heavy metal transport/detoxification protein domain containing
protein
Length = 225
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 45/64 (70%), Gaps = 2/64 (3%)
Query: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
M ILVI V++QCCRC KI K+L CL ++CIEK+EY+ +VIVRG F E+L IW
Sbjct: 1 MAILVITVNMQCCRCKEKIDKILNCLRCKHCIEKIEYE--GEKVIVRGSFCAEELRTCIW 58
Query: 61 CKAG 64
KAG
Sbjct: 59 RKAG 62
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.143 0.490
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,139,222
Number of extensions: 94393
Number of successful extensions: 329
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 11
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 154 (63.9 bits)