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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0400500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0473) R2 : 0.481
β1 : -1.78 (0.203) R2dD : 0.139 R2D : -0.0647
β2 : 0.593 (0.117) R2dC : 0.0289 R2C : 0.0315
β3 : 2.91 (0.207) R2dE : 0.41 R2E : 0.269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.379 (0.116) R2dN8 : 0.0238 R2N8 : 0.11
σ : 0.84
deviance : 325.54
__
_____
C
peak time of C : 6.47
E
wheather : temperature
threshold : 10.3
memory length : 9840
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.33 0.833 4.7 -3.03 0.565 2.29 0.804 -7.44 0.248 6.27 21.65 1379 -- --
324.27 0.839 4.54 -1.81 0.607 2.92 0.661 -- 0.373 6.6 10.7 9830 -- --
314.89 0.826 4.73 -3.25 0.591 2.45 -- -8.36 0.161 6.72 22.55 1329 -- --
325.54 0.84 4.55 -1.78 0.593 2.91 -- -- 0.379 6.47 10.3 9840 -- --
331.27 0.848 4.74 -3.23 -- 2.46 -- -8.4 0.183 -- 22.5 1333 -- --
462.88 1.01 4.34 -0.116 0.647 -- 0.879 -- 1.3 5.56 -- -- -- --
464.76 1.01 4.34 -0.112 0.653 -- -- -- 1.29 5.67 -- -- -- --
343.15 0.863 4.56 -1.79 -- 2.93 -- -- 0.383 -- 10.14 9970 -- --
374.59 0.901 4.44 -- 0.632 1.74 -- -- 0.843 6.32 17 8060 -- --
486.88 1.03 4.35 -0.0913 -- -- -- -- 1.31 -- -- -- -- --
465.09 1.01 4.34 -- 0.651 -- -- -- 1.3 5.68 -- -- -- --
392.02 0.922 4.42 -- -- 1.81 -- -- 0.992 -- 16.41 5579 -- --
487.1 1.03 4.35 -- -- -- -- -- 1.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.92 radiation 1 43200 > th dose independent rect. 18 1
12 284.13 radiation 1 43200 < th dose independent rect. 18 9
14 284.19 radiation 1 43200 < th dose independent rect. 18 7
16 284.22 radiation 1 43200 < th dose independent rect. 18 1
22 285.02 wind 5 43200 > th dose dependent rect. 10 6
23 285.58 wind 3 43200 > th dose dependent rect. 11 3
29 286.93 radiation 1 43200 < th dose dependent rect. 18 11
31 287.06 radiation 1 43200 < th dose dependent rect. 18 9
32 287.07 radiation 1 43200 < th dose dependent rect. 18 7
34 287.08 radiation 1 43200 < th dose dependent rect. 18 1
47 288.04 wind 5 43200 < th dose independent rect. 10 5
49 288.20 wind 5 43200 > th dose independent rect. 10 5
52 288.44 wind 7 43200 > th dose independent rect. 5 11
53 288.46 wind 7 43200 < th dose independent rect. 5 11
68 288.98 wind 5 43200 < th dose independent rect. 9 7
83 289.33 wind 5 43200 > th dose dependent rect. 14 2
84 289.34 humidity 90 43200 > th dose independent rect. 22 1
103 289.83 radiation 1 43200 < th dose dependent rect. 24 5
114 290.04 wind 7 43200 < th dose independent sin 1 NA
118 290.12 radiation 1 43200 < th dose dependent rect. 4 1
119 290.12 radiation 1 43200 < th dose dependent rect. 22 7
122 290.17 wind 7 43200 > th dose independent sin 1 NA
133 290.39 radiation 20 43200 < th dose independent rect. 8 1
142 290.51 atmosphere 1005 43200 > th dose independent rect. 18 1
147 290.57 wind 5 43200 > th dose dependent sin 22 NA
153 290.69 wind 5 43200 < th dose independent rect. 12 1
164 290.87 wind 9 43200 < th dose dependent rect. 11 1
192 291.37 radiation 40 43200 < th dose independent rect. 10 1
195 291.44 radiation 20 43200 < th dose independent rect. 6 3
199 291.47 radiation 20 43200 < th dose independent rect. 4 5
204 291.48 radiation 20 43200 < th dose independent rect. 18 15
210 291.50 radiation 20 43200 < th dose independent rect. 21 12
224 291.77 atmosphere 1005 43200 < th dose independent rect. 18 1
230 291.79 radiation 1 43200 > th dose independent rect. 9 1
235 291.88 radiation 1 43200 < th dose independent rect. 9 1
239 291.91 humidity 90 43200 < th dose independent rect. 18 2
252 292.16 wind 5 43200 > th dose independent rect. 12 1
258 292.21 wind 5 43200 > th dose dependent rect. 5 13
272 292.40 humidity 90 43200 > th dose independent rect. 20 1
310 292.71 radiation 1 43200 < th dose dependent rect. 18 16
332 292.98 wind 5 43200 > th dose independent rect. 9 13
373 293.38 humidity 80 43200 < th dose independent rect. 21 1
391 293.66 humidity 90 43200 < th dose independent rect. 9 1
397 293.69 atmosphere 1010 43200 < th dose independent rect. 6 1
436 293.97 humidity 90 43200 > th dose independent rect. 19 4
463 294.22 radiation 1 43200 < th dose dependent sin 11 NA
485 294.38 humidity 90 43200 > th dose dependent rect. 4 7
500 294.49 wind 1 43200 < th dose dependent rect. 23 3
517 294.57 humidity 90 43200 > th dose dependent rect. 3 10
548 294.73 humidity 80 43200 > th dose dependent rect. 10 1
569 294.88 radiation 1 43200 < th dose dependent rect. 9 1
577 294.94 radiation 1 43200 < th dose dependent rect. 4 6
578 294.94 radiation 1 43200 < th dose dependent rect. 2 8
579 294.94 radiation 1 43200 < th dose dependent rect. 24 10
580 294.94 radiation 1 43200 < th dose dependent rect. 22 12
619 295.08 temperature 20 43200 > th dose independent rect. 6 1
626 295.11 temperature 20 43200 < th dose independent rect. 5 3
646 295.14 humidity 90 43200 > th dose dependent rect. 5 1
656 295.22 atmosphere 1010 43200 > th dose independent rect. 6 1
657 295.22 temperature 20 43200 > th dose independent rect. 5 3
658 295.22 atmosphere 1005 43200 > th dose independent rect. 11 8
672 295.25 radiation 1 43200 < th dose independent rect. 8 4
680 295.26 radiation 1 43200 > th dose independent rect. 8 4
696 295.32 humidity 90 43200 > th dose dependent rect. 3 20
700 295.34 temperature 20 43200 < th dose independent rect. 6 1
702 295.34 radiation 1 43200 < th dose dependent rect. 2 12
703 295.34 radiation 1 43200 < th dose dependent rect. 24 14
707 295.35 radiation 1 43200 < th dose dependent rect. 4 10
714 295.37 atmosphere 1010 43200 > th dose independent rect. 8 1
719 295.38 atmosphere 1010 43200 > th dose independent rect. 6 3
768 295.48 radiation 1 43200 < th dose dependent rect. 6 23
779 295.52 humidity 90 43200 > th dose independent rect. 9 1
784 295.54 humidity 80 43200 > th dose independent rect. 12 1
790 295.55 atmosphere 1005 43200 < th dose independent rect. 11 8
828 295.69 radiation 1 43200 < th dose dependent rect. 4 15
829 295.69 radiation 1 43200 < th dose dependent rect. 2 17
830 295.69 radiation 1 43200 < th dose dependent rect. 24 19
831 295.69 radiation 1 43200 < th dose dependent rect. 22 21
832 295.70 radiation 1 43200 < th dose dependent no NA NA
879 295.72 humidity 90 43200 > th dose independent rect. 8 17
880 295.73 radiation 1 43200 > th dose independent rect. 18 17
901 295.79 humidity 90 43200 > th dose dependent sin 2 NA
906 295.81 humidity 80 43200 < th dose independent rect. 12 2
912 295.82 radiation 1 43200 > th dose independent rect. 7 6
913 295.82 humidity 60 43200 > th dose independent rect. 19 17
916 295.83 radiation 1 43200 < th dose independent rect. 7 7
936 295.86 radiation 1 43200 < th dose dependent rect. 9 3
949 295.88 radiation 1 43200 < th dose dependent rect. 6 13