BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0400500 Os04g0400500|Os04g0400500
(213 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0400500 Heavy metal transport/detoxification protein d... 282 1e-76
Os04g0400000 Heavy metal transport/detoxification protein d... 197 6e-51
Os04g0400800 Heavy metal transport/detoxification protein d... 102 2e-22
Os04g0401000 Heavy metal transport/detoxification protein d... 88 4e-18
Os04g0400600 Heavy metal transport/detoxification protein d... 75 4e-14
Os04g0400700 73 2e-13
>Os04g0400500 Heavy metal transport/detoxification protein domain containing
protein
Length = 213
Score = 282 bits (722), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/213 (72%), Positives = 154/213 (72%)
Query: 1 MVKIDEMGASILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDA 60
MVKIDEMGASILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDA
Sbjct: 1 MVKIDEMGASILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDA 60
Query: 61 GCLRNKICCKAGGKVVKDIKTVDAWPPPKEQVCKLXXXXXXXXXXXXXXXXXXXTQQCYH 120
GCLRNKICCKAGGKVVKDIKTVDAWPPPKEQVCKL TQQCYH
Sbjct: 61 GCLRNKICCKAGGKVVKDIKTVDAWPPPKEQVCKLVPFPVPYPAPPPPSCCPPSTQQCYH 120
Query: 121 XXXXXXXXXXXXXXXXXTYCGGHGGGCNKPAVPPCAGGCSISDGGACGASCKXXXXXXXX 180
TYCGGHGGGCNKPAVPPCAGGCSISDGGACGASCK
Sbjct: 121 CCPEPPPPPPKPKPCECTYCGGHGGGCNKPAVPPCAGGCSISDGGACGASCKPPPPPPPA 180
Query: 181 XXXXXXXXXXXXXXXCGGYKFACEENSDVCAIM 213
CGGYKFACEENSDVCAIM
Sbjct: 181 IWPPQPSFYYYPPPPCGGYKFACEENSDVCAIM 213
>Os04g0400000 Heavy metal transport/detoxification protein domain containing
protein
Length = 215
Score = 197 bits (500), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 133/217 (61%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 7 MGASILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDAGCLRNK 66
MGASILVITVDLKCCRCRAKITKVLDCLK EYCIEKTEFEEKDDKVIVRGKFDAG LRNK
Sbjct: 1 MGASILVITVDLKCCRCRAKITKVLDCLKEEYCIEKTEFEEKDDKVIVRGKFDAGSLRNK 60
Query: 67 ICCKAGGKVVKDIKTVDAW---------PPPKEQVCKL-XXXXXXXXXXXXXXXXXXXTQ 116
ICCKAGGKVVKDIKTVDAW ++ VCKL T
Sbjct: 61 ICCKAGGKVVKDIKTVDAWPPPKEPEKKKKDEKPVCKLVPFPVPYPAPPPPPACCPPSTH 120
Query: 117 QCYHXXXXXXXXXXXXXXXXXTYCGGHGGGCNKPAVPPCAGGCSISDGGACGASCKXXXX 176
QCYH GGHGGGCNKPAV PC GGCSISDGGACGASCK
Sbjct: 121 QCYHCCPAPPKPKPKPCECTHHC-GGHGGGCNKPAVSPCGGGCSISDGGACGASCK-PPP 178
Query: 177 XXXXXXXXXXXXXXXXXXXCGGYKFACEENSDVCAIM 213
CGGYKFACEENSDVC IM
Sbjct: 179 PPAAIWPPQPSFYYYPPPPCGGYKFACEENSDVCVIM 215
>Os04g0400800 Heavy metal transport/detoxification protein domain containing
protein
Length = 282
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 63/80 (78%)
Query: 11 ILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDAGCLRNKICCK 70
ILVI+ DLKCCRC+ K++K+L L+ +Y IEKTE+E+KDD+VIVRG F LR+ I CK
Sbjct: 3 ILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIWCK 62
Query: 71 AGGKVVKDIKTVDAWPPPKE 90
AG K+++DI VD WPPPK+
Sbjct: 63 AGRKLIRDIAVVDVWPPPKK 82
>Os04g0401000 Heavy metal transport/detoxification protein domain containing
protein
Length = 210
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Query: 11 ILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDAGCLRNKICCK 70
ILVI VDL+CCRC AKI KVL CL+ EYCIEK E++ K+++VIVRGKFD L KI CK
Sbjct: 3 ILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIWCK 62
Query: 71 AGGKVVKDIKTVDAW 85
A GK++K+I VD W
Sbjct: 63 A-GKIIKEILIVDVW 76
>Os04g0400600 Heavy metal transport/detoxification protein domain containing
protein
Length = 225
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
Query: 10 SILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDAGCLRNKICC 69
+ILVITV+++CCRC+ KI K+L+CL+ ++CIEK E+E +KVIVRG F A LR I
Sbjct: 2 AILVITVNMQCCRCKEKIDKILNCLRCKHCIEKIEYE--GEKVIVRGSFCAEELRTCIWR 59
Query: 70 KAGGKVVKDIKTVDAWPPPKEQV 92
KAG K++ I V+ WPPP V
Sbjct: 60 KAGCKIIVSIVIVEVWPPPPPAV 82
>Os04g0400700
Length = 247
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
Query: 10 SILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDAGCLRNKICC 69
+ILVITV+++CCRC+ KI K+L+CL+ ++CIEK E+E +KVIVRG F A LR I
Sbjct: 2 AILVITVNMQCCRCKEKIDKILNCLRCKHCIEKIEYE--GEKVIVRGGFCAEELRKCIWR 59
Query: 70 KAGGKVVKDIKTVDAW 85
KAG KV+ I V+ W
Sbjct: 60 KAGCKVIVSIVIVELW 75
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.140 0.474
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,871,928
Number of extensions: 242152
Number of successful extensions: 806
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 8
Length of query: 213
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 116
Effective length of database: 11,971,043
Effective search space: 1388640988
Effective search space used: 1388640988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)