Os04g0400600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Heavy metal transport/detoxification protein domain containing protein.
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Os04g0400600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Heavy metal transport/detoxification protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.17 | 0.247 | 2.92 | -0.0979 | 0.0566 | 1.97 | -0.186 | -17.8 | -0.0457 | 10.7 | 5 | 10 | 10 | 1 |
| 34.34 | 0.273 | 2.92 | -0.0358 | 0.042 | 3.33 | -0.227 | -- | -0.0424 | 11.2 | 5.7 | 5 | 9.97 | 0.271 |
| 28.26 | 0.25 | 2.92 | -0.107 | 0.066 | 1.96 | -- | -17.9 | -0.047 | 8.99 | 5 | 10 | 10 | 1 |
| 28.27 | 0.249 | 2.92 | -0.0362 | 0.0658 | 4.63 | -- | -- | -0.0469 | 8.98 | 5.693 | 11 | 9.97 | 0.0158 |
| 28.51 | 0.25 | 2.92 | -0.107 | -- | 1.99 | -- | -17.9 | -0.0464 | -- | 5 | 10 | 10 | 1 |
| 49.26 | 0.329 | 2.92 | -0.0652 | 0.0964 | -- | -0.277 | -- | -0.0633 | 10.1 | -- | -- | -- | -- |
| 49.54 | 0.33 | 2.92 | -0.077 | 0.102 | -- | -- | -- | -0.0646 | 9.22 | -- | -- | -- | -- |
| 28.51 | 0.25 | 2.92 | -0.0361 | -- | 4.66 | -- | -- | -0.0465 | -- | 5.82 | 12 | 9.97 | 0.0114 |
| 28.3 | 0.249 | 2.92 | -- | 0.0658 | 4.64 | -- | -- | -0.0429 | 9.02 | 5.705 | 12 | 9.97 | 0.00871 |
| 50.14 | 0.331 | 2.93 | -0.0773 | -- | -- | -- | -- | -0.0641 | -- | -- | -- | -- | -- |
| 49.69 | 0.33 | 2.92 | -- | 0.102 | -- | -- | -- | -0.056 | 9.28 | -- | -- | -- | -- |
| 28.55 | 0.25 | 2.92 | -- | -- | 4.67 | -- | -- | -0.0424 | -- | 5.82 | 12 | 9.97 | 0.0114 |
| 50.3 | 0.331 | 2.92 | -- | -- | -- | -- | -- | -0.0555 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.17 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 5 | 28.17 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 9 | 28.36 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 27 | 28.80 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 2 |
| 32 | 29.28 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 35 | 30.22 | wind | 9 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 269 | 42.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 1 |
| 270 | 42.51 | temperature | 25 | 30 | > th | dose dependent | rect. | 2 | 3 |
| 291 | 42.94 | temperature | 25 | 90 | > th | dose independent | rect. | 3 | 1 |
| 316 | 43.31 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 2 | 1 |
| 324 | 43.31 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 453 | 44.47 | temperature | 25 | 30 | > th | dose independent | rect. | 9 | 1 |
| 578 | 45.49 | wind | 5 | 720 | < th | dose independent | rect. | 22 | 9 |
| 593 | 45.54 | wind | 5 | 720 | > th | dose independent | rect. | 22 | 3 |
| 599 | 45.55 | wind | 5 | 720 | > th | dose independent | rect. | 22 | 5 |
| 630 | 45.64 | wind | 9 | 720 | > th | dose independent | rect. | 22 | 1 |
| 634 | 45.64 | wind | 9 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 671 | 45.75 | radiation | 10 | 90 | < th | dose independent | rect. | 8 | 1 |
| 781 | 45.95 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 1 |
| 834 | 46.02 | atmosphere | 995 | 720 | < th | dose independent | rect. | 16 | 1 |
| 842 | 46.02 | atmosphere | 995 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 847 | 46.03 | wind | 5 | 720 | < th | dose independent | rect. | 1 | 7 |
| 873 | 46.04 | radiation | 10 | 270 | < th | dose dependent | rect. | 7 | 1 |