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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0400800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0384) R2 : 0.142
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.908 (0.119) R2dE : 0.112 R2E : 0.0836
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.396 (0.0813) R2dN8 : 0.0582 R2N8 : 0.0302
σ : 0.721
deviance : 239.94
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.05
memory length : 1137
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.32 0.707 3.49 -1.57 0.139 1.42 0.671 -4.79 -0.718 3.63 25.31 1165 -- --
238.15 0.719 3.38 -0.597 0.277 1.19 0.665 -- -0.584 3.66 11.44 2128 -- --
227.58 0.703 3.48 -1.54 0.141 1.41 -- -4.6 -0.699 3.01 25.44 1156 -- --
234.46 0.713 3.39 -0.529 0.12 1.03 -- -- -0.535 2.74 24.7 1145 -- --
228.58 0.704 3.48 -1.48 -- 1.43 -- -4.23 -0.729 -- 24.8 1147 -- --
262.56 0.76 3.33 -0.152 0.338 -- 0.403 -- -0.352 1.6 -- -- -- --
263.16 0.76 3.33 -0.165 0.337 -- -- -- -0.354 1.25 -- -- -- --
234.83 0.714 3.35 -0.458 -- 1.01 -- -- -0.458 -- 24.9 1145 -- --
238.44 0.719 3.33 -- 0.164 0.845 -- -- -0.38 2.56 25.45 1153 -- --
270.19 0.768 3.33 -0.152 -- -- -- -- -0.347 -- -- -- -- --
263.88 0.76 3.33 -- 0.335 -- -- -- -0.336 1.24 -- -- -- --
239.94 0.721 3.34 -- -- 0.908 -- -- -0.396 -- 25.05 1137 -- --
270.8 0.768 3.32 -- -- -- -- -- -0.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 219.19 temperature 25 720 > th dose dependent rect. 18 2
4 220.04 temperature 25 720 > th dose dependent rect. 17 6
8 220.54 humidity 70 720 < th dose independent rect. 18 1
13 221.51 humidity 70 720 < th dose independent rect. 18 13
14 221.51 humidity 80 720 < th dose dependent rect. 18 1
38 222.93 humidity 70 720 > th dose independent rect. 18 7
92 225.31 temperature 25 720 > th dose dependent sin 12 NA
100 225.58 radiation 20 14400 < th dose independent rect. 3 3
113 226.12 humidity 70 720 > th dose independent rect. 17 15
155 227.19 radiation 1 1440 < th dose dependent rect. 18 9
165 227.46 radiation 1 1440 < th dose dependent rect. 18 2
180 227.70 radiation 1 1440 < th dose dependent rect. 18 5
183 227.76 humidity 60 720 > th dose dependent rect. 17 6
184 227.77 radiation 20 14400 < th dose independent rect. 18 12
187 227.82 humidity 70 720 > th dose independent sin 12 NA
193 227.95 radiation 30 14400 < th dose independent rect. 16 11
195 228.02 temperature 30 720 < th dose dependent rect. 17 6
203 228.20 radiation 30 14400 < th dose independent rect. 16 2
205 228.21 radiation 30 14400 < th dose independent rect. 16 4
213 228.34 radiation 30 14400 < th dose independent rect. 16 7
267 228.97 humidity 70 720 < th dose dependent rect. 18 13
338 229.50 humidity 80 720 > th dose independent rect. 18 4
341 229.53 temperature 25 720 > th dose independent rect. 18 2
367 229.81 temperature 25 720 > th dose independent rect. 16 7
372 229.88 humidity 70 720 < th dose independent sin 12 NA
388 229.96 humidity 70 1440 > th dose independent rect. 18 2
420 230.22 temperature 30 720 < th dose dependent sin 16 NA
421 230.22 wind 5 43200 > th dose dependent rect. 5 16
432 230.29 wind 5 43200 > th dose dependent rect. 5 12
442 230.34 wind 5 43200 > th dose dependent rect. 24 21
482 230.49 wind 5 43200 > th dose dependent sin 0 NA
530 230.61 wind 7 43200 > th dose independent rect. 23 17
543 230.65 wind 7 43200 < th dose independent rect. 23 17
547 230.66 wind 5 43200 > th dose dependent rect. 5 20
566 230.72 wind 5 43200 > th dose independent rect. 5 16
579 230.74 wind 5 43200 > th dose independent rect. 9 7
587 230.74 radiation 1 1440 > th dose dependent rect. 18 11
594 230.76 wind 5 43200 > th dose independent sin 23 NA
603 230.78 temperature 25 720 < th dose independent rect. 15 8
606 230.79 wind 5 43200 > th dose independent rect. 11 20
626 230.82 wind 5 43200 > th dose dependent rect. 12 22
627 230.83 wind 5 43200 < th dose independent rect. 4 17
629 230.83 temperature 30 720 < th dose dependent rect. 18 1
636 230.84 wind 7 43200 < th dose independent rect. 23 22
641 230.85 wind 5 43200 < th dose independent rect. 9 7
642 230.85 wind 7 43200 < th dose independent rect. 2 14
648 230.86 wind 5 43200 > th dose independent rect. 5 13
660 230.87 wind 5 43200 < th dose independent rect. 10 20
664 230.88 wind 5 43200 < th dose independent sin 0 NA
669 230.88 temperature 30 1440 < th dose independent rect. 15 12
670 230.88 temperature 25 720 < th dose independent rect. 11 13
681 230.89 wind 5 43200 < th dose independent rect. 5 12
683 230.89 temperature 25 720 > th dose independent rect. 9 15
693 230.90 temperature 30 1440 < th dose independent rect. 15 5
696 230.90 wind 5 43200 < th dose independent rect. 4 14
699 230.90 wind 5 43200 > th dose independent rect. 9 16
709 230.90 wind 5 43200 > th dose dependent rect. 18 23
711 230.91 wind 5 43200 > th dose independent rect. 8 9
717 230.91 temperature 30 1440 < th dose independent rect. 15 17
728 230.92 wind 7 43200 > th dose independent rect. 23 22
734 230.92 wind 5 43200 > th dose dependent rect. 9 23
752 230.94 wind 7 43200 > th dose independent rect. 18 22
778 230.96 wind 7 43200 > th dose independent rect. 20 20
807 230.98 wind 7 43200 < th dose independent rect. 18 22
831 231.00 wind 5 43200 > th dose dependent no NA NA
877 231.04 wind 7 43200 < th dose independent rect. 20 21
893 231.05 wind 5 43200 > th dose dependent rect. 20 23
897 231.06 wind 5 43200 < th dose independent rect. 9 16
898 231.06 wind 7 43200 > th dose independent rect. 13 22
920 231.08 wind 7 43200 < th dose independent rect. 13 22
959 231.10 temperature 25 1440 > th dose dependent rect. 13 21