BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0400800 Os04g0400800|AK110580
(282 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0400800 Heavy metal transport/detoxification protein d... 248 4e-66
Os04g0400500 Heavy metal transport/detoxification protein d... 102 3e-22
Os04g0400000 Heavy metal transport/detoxification protein d... 94 1e-19
Os04g0401000 Heavy metal transport/detoxification protein d... 88 7e-18
Os04g0400700 80 2e-15
Os04g0400600 Heavy metal transport/detoxification protein d... 79 4e-15
>Os04g0400800 Heavy metal transport/detoxification protein domain containing
protein
Length = 282
Score = 248 bits (632), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 137/216 (63%), Positives = 137/216 (63%)
Query: 1 MGILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIW 60
MGILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIW
Sbjct: 1 MGILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIW 60
Query: 61 CKAGRKLIRDIAVVDVWPPPKKXXXXXXXXXXXXXXXXXXXXXXXXXXXKVDGAGNKGEK 120
CKAGRKLIRDIAVVDVWPPPKK KVDGAGNKGEK
Sbjct: 61 CKAGRKLIRDIAVVDVWPPPKKPETAGGTTPAPAVANPPPAATVAATPPKVDGAGNKGEK 120
Query: 121 QXXXXXXXXXXXXXXXXXXXXXXXXXMQHCQTSSTTWTGSXXXXXXXXXXXXXXXXXXXX 180
Q MQHCQTSSTTWTGS
Sbjct: 121 QPKTTTPPPPPPVPLPYPWPPCYYPPMQHCQTSSTTWTGSCPTQCHCCPKPPPPETKTKA 180
Query: 181 XEYCSRDHCHGGCKITXXXXXXSRCGGCDHADCGGW 216
EYCSRDHCHGGCKIT SRCGGCDHADCGGW
Sbjct: 181 CEYCSRDHCHGGCKITPPPPPPSRCGGCDHADCGGW 216
>Os04g0400500 Heavy metal transport/detoxification protein domain containing
protein
Length = 213
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 63/80 (78%)
Query: 3 ILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIWCK 62
ILVI+ DLKCCRC+ K++K+L L+ +Y IEKTE+E+KDD+VIVRG F LR+ I CK
Sbjct: 11 ILVITVDLKCCRCRAKITKVLDCLKAEYCIEKTEFEEKDDKVIVRGKFDAGCLRNKICCK 70
Query: 63 AGRKLIRDIAVVDVWPPPKK 82
AG K+++DI VD WPPPK+
Sbjct: 71 AGGKVVKDIKTVDAWPPPKE 90
>Os04g0400000 Heavy metal transport/detoxification protein domain containing
protein
Length = 215
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 59/75 (78%)
Query: 3 ILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIWCK 62
ILVI+ DLKCCRC+ K++K+L L+++Y IEKTE+E+KDD+VIVRG F LR+ I CK
Sbjct: 5 ILVITVDLKCCRCRAKITKVLDCLKEEYCIEKTEFEEKDDKVIVRGKFDAGSLRNKICCK 64
Query: 63 AGRKLIRDIAVVDVW 77
AG K+++DI VD W
Sbjct: 65 AGGKVVKDIKTVDAW 79
>Os04g0401000 Heavy metal transport/detoxification protein domain containing
protein
Length = 210
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 1 MGILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIW 60
MGILVI DL+CCRC K+ K+L L ++Y IEK EY+ K++RVIVRG F +KL IW
Sbjct: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
Query: 61 CKAGRKLIRDIAVVDVW 77
CKAG K+I++I +VDVW
Sbjct: 61 CKAG-KIIKEILIVDVW 76
>Os04g0400700
Length = 247
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 1 MGILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIW 60
M ILVI+ +++CCRCKEK+ KIL LR K+ IEK EYE ++VIVRG F ++LR IW
Sbjct: 1 MAILVITVNMQCCRCKEKIDKILNCLRCKHCIEKIEYEG--EKVIVRGGFCAEELRKCIW 58
Query: 61 CKAGRKLIRDIAVVDVW 77
KAG K+I I +V++W
Sbjct: 59 RKAGCKVIVSIVIVELW 75
>Os04g0400600 Heavy metal transport/detoxification protein domain containing
protein
Length = 225
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 61/80 (76%), Gaps = 2/80 (2%)
Query: 1 MGILVISADLKCCRCKEKLSKILCSLRDKYGIEKTEYEDKDDRVIVRGNFPTDKLRSVIW 60
M ILVI+ +++CCRCKEK+ KIL LR K+ IEK EYE ++VIVRG+F ++LR+ IW
Sbjct: 1 MAILVITVNMQCCRCKEKIDKILNCLRCKHCIEKIEYEG--EKVIVRGSFCAEELRTCIW 58
Query: 61 CKAGRKLIRDIAVVDVWPPP 80
KAG K+I I +V+VWPPP
Sbjct: 59 RKAGCKIIVSIVIVEVWPPP 78
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,957,852
Number of extensions: 166331
Number of successful extensions: 287
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 8
Length of query: 282
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 182
Effective length of database: 11,814,401
Effective search space: 2150220982
Effective search space used: 2150220982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)