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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0412300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Heavy metal transport/detoxification protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.15 (0.0831) R2 : 0.417
β1 : -3.86 (0.309) R2dD : 0.211 R2D : 0.0711
β2 : 0.672 (0.202) R2dC : 0.0145 R2C : 0.032
β3 : 3.37 (0.256) R2dE : 0.245 R2E : 0.186
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.799 (0.178) R2dN8 : 0.0354 R2N8 : 0.0216
σ : 1.55
deviance : 1105.71
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_____
C
peak time of C : 23.7
E
wheather : temperature
threshold : 27.12
memory length : 1058
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.39
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1080.26 1.54 5.34 -5.38 0.552 4.31 -2.15 -7.98 -1.05 21.8 26.84 1064 7.81 --
1088.68 1.54 5.16 -3.92 0.552 3.53 -2.12 -- -0.847 21.6 26.7 1032 7.59 --
1094.61 1.54 5.33 -5.13 0.653 4.14 -- -7.33 -1.04 23.3 26.78 1068 7.61 --
1105.71 1.55 5.15 -3.86 0.672 3.37 -- -- -0.799 23.7 27.12 1058 7.39 --
1112.46 1.55 5.36 -5.45 -- 4.54 -- -9.01 -1.13 -- 26.41 984 7.38 --
1507.23 1.82 5.22 -3.05 1.35 -- -0.404 -- -1.08 0.942 -- -- -- --
1507.82 1.82 5.22 -3.04 1.35 -- -- -- -1.08 1.07 -- -- -- --
1125.29 1.56 5.16 -3.85 -- 3.62 -- -- -0.882 -- 26.45 971 7.39 --
1473.64 1.79 5.07 -- 0.747 2.71 -- -- -0.384 0.519 27.83 1023 6.8 --
1620.77 1.88 5.2 -2.99 -- -- -- -- -1.05 -- -- -- -- --
1751.39 1.96 5.14 -- 1.3 -- -- -- -0.737 0.97 -- -- -- --
1500.31 1.8 5.06 -- -- 3.06 -- -- -0.436 -- 26.7 950 6.87 --
1856.43 2.01 5.12 -- -- -- -- -- -0.718 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1127.99 humidity 80 720 < th dose dependent rect. 18 1
2 1128.14 humidity 70 720 < th dose independent rect. 18 2
27 1134.64 humidity 80 720 < th dose dependent rect. 17 4
30 1136.96 temperature 25 720 > th dose dependent rect. 17 6
36 1142.15 temperature 30 720 > th dose independent rect. 18 1
52 1144.37 temperature 30 720 > th dose dependent rect. 18 15
53 1144.64 temperature 30 720 > th dose dependent rect. 18 1
141 1152.21 temperature 30 1440 > th dose dependent sin 12 NA
221 1158.86 humidity 50 1440 < th dose independent rect. 16 1
222 1159.27 humidity 50 1440 < th dose dependent rect. 16 1
252 1162.28 temperature 30 1440 < th dose independent rect. 17 11
273 1163.44 temperature 30 1440 < th dose independent rect. 17 2
310 1164.67 humidity 50 1440 > th dose independent rect. 16 1
357 1168.08 temperature 30 1440 > th dose independent sin 12 NA
360 1168.34 temperature 30 1440 < th dose independent sin 12 NA
383 1170.50 radiation 1 720 > th dose independent rect. 18 11
407 1171.00 humidity 60 1440 > th dose independent rect. 17 11
411 1171.16 humidity 70 720 > th dose independent rect. 18 8
422 1171.86 humidity 60 1440 > th dose independent rect. 17 3
508 1174.51 radiation 1 720 > th dose independent rect. 18 1
572 1175.76 temperature 30 1440 > th dose dependent no NA NA
788 1180.84 temperature 30 1440 > th dose independent rect. 15 19
789 1180.85 temperature 30 1440 < th dose independent rect. 15 19