BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0412300 Os03g0412300|AK071008
(248 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0412300 Heavy metal transport/detoxification protein d... 251 4e-67
Os07g0606900 Heavy metal transport/detoxification protein d... 117 5e-27
Os11g0629100 Heavy metal transport/detoxification protein d... 87 2e-17
AK105937 77 1e-14
Os03g0751600 Heavy metal transport/detoxification protein d... 76 2e-14
Os04g0401000 Heavy metal transport/detoxification protein d... 65 6e-11
>Os03g0412300 Heavy metal transport/detoxification protein domain containing
protein
Length = 248
Score = 251 bits (641), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 140/248 (56%), Positives = 140/248 (56%)
Query: 1 MAGKMSTIVMMVDLECDRCYRKIRRVLCKLQDKASIKAISYDEKNNTVTVAGPFDADEVS 60
MAGKMSTIVMMVDLECDRCYRKIRRVLCKLQDKASIKAISYDEKNNTVTVAGPFDADEVS
Sbjct: 1 MAGKMSTIVMMVDLECDRCYRKIRRVLCKLQDKASIKAISYDEKNNTVTVAGPFDADEVS 60
Query: 61 DRLCSSAGKVITDIRVVXXXXXXXXXXXXXXXXXXXXXXXXDGSAXXXXXXXXXKPEMIK 120
DRLCSSAGKVITDIRVV DGSA KPEMIK
Sbjct: 61 DRLCSSAGKVITDIRVVGGAKPMPGGGGGGAKAHANKPAGKDGSAGGGGGGGGGKPEMIK 120
Query: 121 KHVKFEMAXXXXXXXXXXXXXNRKPKVVTTTNHAAGALARMEGRRXXXXXXXXXXXXXXX 180
KHVKFEMA NRKPKVVTTTNHAAGALARMEGRR
Sbjct: 121 KHVKFEMADDMDDGRHHHHHDNRKPKVVTTTNHAAGALARMEGRRAEAPSMAMAAAMAPA 180
Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXLEWGHSXXXXXXXXXXXXXXXXXXXXXXQPPYYDE 240
LEWGHS QPPYYDE
Sbjct: 181 PMPMTVQATATPSIWPAPAPSAPAPLEWGHSAPTYGAGWAPPPAYGYGGRSPYQPPYYDE 240
Query: 241 EPAGCSVM 248
EPAGCSVM
Sbjct: 241 EPAGCSVM 248
>Os07g0606900 Heavy metal transport/detoxification protein domain containing
protein
Length = 366
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 66/76 (86%)
Query: 1 MAGKMSTIVMMVDLECDRCYRKIRRVLCKLQDKASIKAISYDEKNNTVTVAGPFDADEVS 60
MA K+ST+V+ VDLECDRCY+KIRRVLC++QDKA+IK ISYDEKNN V V+GPFDAD+V
Sbjct: 59 MADKISTVVLNVDLECDRCYKKIRRVLCRIQDKANIKTISYDEKNNAVMVSGPFDADKVC 118
Query: 61 DRLCSSAGKVITDIRV 76
+LC AG++I D++V
Sbjct: 119 KKLCCKAGRIIKDMQV 134
>Os11g0629100 Heavy metal transport/detoxification protein domain containing
protein
Length = 306
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 1 MAGKMSTIVMMVDLECDRCYRKIRRVLCKLQDKASIKAISYDEKNNTVTVAGPFDADEVS 60
MA K+ST+++ VDL C +CY KIR++LC LQD+ I ISYD KNN V +AG FD +
Sbjct: 1 MAEKISTLILKVDLACHKCYNKIRKILCNLQDQERITTISYDTKNNIVVIAGTFDPQRLC 60
Query: 61 DRLCSSAGKVITDIRVV 77
R+ GK+I DI +V
Sbjct: 61 CRIRCKGGKIIKDIHIV 77
>AK105937
Length = 258
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Query: 7 TIVMMVDLECDRCYRKIRRVLCKLQDKAS--IKAISYDEKNNTVTVAGPFDADEVSDRLC 64
TI++ VDLEC+RCY KI RVL +++DK I I +D K+N V V+GPFD D+++D+LC
Sbjct: 6 TIIVKVDLECERCYAKIDRVLTRIRDKGEFVIDDIEFDVKHNKVIVSGPFDPDKLADKLC 65
Query: 65 SSAGKVITDIRVV 77
A K+I +I +V
Sbjct: 66 CKACKIIKEIEIV 78
>Os03g0751600 Heavy metal transport/detoxification protein domain containing
protein
Length = 237
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 53/73 (72%), Gaps = 2/73 (2%)
Query: 7 TIVMMVDLECDRCYRKIRRVLCKLQDKAS--IKAISYDEKNNTVTVAGPFDADEVSDRLC 64
TI++ VDLEC+RCY KI RVL +++DK I I +D K+N V V+GPFD D+++D+LC
Sbjct: 6 TIIVKVDLECERCYAKIDRVLTRIRDKGEFVIDDIEFDVKHNKVIVSGPFDPDKLADKLC 65
Query: 65 SSAGKVITDIRVV 77
A K+I +I +V
Sbjct: 66 CKACKIIKEIEIV 78
>Os04g0401000 Heavy metal transport/detoxification protein domain containing
protein
Length = 210
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%)
Query: 5 MSTIVMMVDLECDRCYRKIRRVLCKLQDKASIKAISYDEKNNTVTVAGPFDADEVSDRLC 64
M +V++VDL+C RC KIR+VL L+++ I+ + YD KNN V V G FD +++ ++
Sbjct: 1 MGILVILVDLQCCRCDAKIRKVLGCLEEEYCIEKVEYDVKNNRVIVRGKFDPEKLCKKIW 60
Query: 65 SSAGKVITDIRVV 77
AGK+I +I +V
Sbjct: 61 CKAGKIIKEILIV 73
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,566,658
Number of extensions: 99509
Number of successful extensions: 211
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 7
Length of query: 248
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 150
Effective length of database: 11,918,829
Effective search space: 1787824350
Effective search space used: 1787824350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)