BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0370300 Os04g0370300|AK065364
(192 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0370300 Conserved hypothetical protein 360 e-100
Os04g0370600 4Fe-4S ferredoxin, iron-sulfur binding domain ... 322 1e-88
Os04g0370500 Leucine-rich repeat, cysteine-containing conta... 298 1e-81
Os12g0517000 Cyclin-like F-box domain containing protein 203 6e-53
Os02g0798900 Conserved hypothetical protein 200 7e-52
Os04g0371600 Leucine-rich repeat, cysteine-containing conta... 197 3e-51
Os12g0526600 Cyclin-like F-box domain containing protein 182 1e-46
Os12g0516900 Cyclin-like F-box domain containing protein 182 1e-46
Os12g0517100 Cyclin-like F-box domain containing protein 160 4e-40
Os04g0370800 108 2e-24
>Os04g0370300 Conserved hypothetical protein
Length = 192
Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/192 (94%), Positives = 181/192 (94%)
Query: 1 MEHLSXXXXXXXXXXXTRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGLATEDFLALCSR 60
MEHLS TRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGLATEDFLALCSR
Sbjct: 1 MEHLSEELIIEILKKITRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGLATEDFLALCSR 60
Query: 61 FPNLLKVEIDYSGSTPGNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSYCK 120
FPNLLKVEIDYSGSTPGNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSYCK
Sbjct: 61 FPNLLKVEIDYSGSTPGNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSYCK 120
Query: 121 KLISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEELVV 180
KLISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEELVV
Sbjct: 121 KLISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEELVV 180
Query: 181 NNCQEISQYDFL 192
NNCQEISQYDFL
Sbjct: 181 NNCQEISQYDFL 192
>Os04g0370600 4Fe-4S ferredoxin, iron-sulfur binding domain containing protein
Length = 479
Score = 322 bits (824), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 157/192 (81%), Positives = 174/192 (90%)
Query: 1 MEHLSXXXXXXXXXXXTRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGLATEDFLALCSR 60
MEHLS TRTSDLNS+SLVSKQLY IDAEQRA I +GCGL+TEDF ALCSR
Sbjct: 1 MEHLSEELIIEILKRITRTSDLNSVSLVSKQLYAIDAEQRATICIGCGLSTEDFSALCSR 60
Query: 61 FPNLLKVEIDYSGSTPGNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSYCK 120
FPNLLKVEIDYSGSTPGNGNHIDNQGLFVL+SCCTLLNDITL+FCSKINDAGI CL+YCK
Sbjct: 61 FPNLLKVEIDYSGSTPGNGNHIDNQGLFVLTSCCTLLNDITLSFCSKINDAGIACLTYCK 120
Query: 121 KLISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEELVV 180
KL+SLKLNS+PEVTSSGLLM+ FGCKALSSL++NDCKGIAGSTEWLEYLG+DGSLEEL+V
Sbjct: 121 KLMSLKLNSIPEVTSSGLLMVAFGCKALSSLYLNDCKGIAGSTEWLEYLGSDGSLEELIV 180
Query: 181 NNCQEISQYDFL 192
+NC+ +SQY+FL
Sbjct: 181 SNCKGVSQYNFL 192
>Os04g0370500 Leucine-rich repeat, cysteine-containing containing protein
Length = 480
Score = 298 bits (764), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 151/192 (78%), Positives = 164/192 (85%)
Query: 1 MEHLSXXXXXXXXXXXTRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGLATEDFLALCSR 60
ME LS TRTSDLNSLSLVSKQLY IDAEQRA I + CGL+TEDF ALCSR
Sbjct: 1 MERLSEELIIEILKRITRTSDLNSLSLVSKQLYAIDAEQRATICIDCGLSTEDFSALCSR 60
Query: 61 FPNLLKVEIDYSGSTPGNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSYCK 120
FPNLLKVEI SGSTPGNGNHIDNQGLFVLSS C LND+TL+FCSKINDAGI L+YCK
Sbjct: 61 FPNLLKVEIGNSGSTPGNGNHIDNQGLFVLSSSCNSLNDLTLSFCSKINDAGIASLTYCK 120
Query: 121 KLISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEELVV 180
KL+SLKLNS+P+VTSSGLL++ FGCKALSSL++NDCKGIA STEWLEYLG+DGSLEELVV
Sbjct: 121 KLMSLKLNSIPDVTSSGLLLVAFGCKALSSLYLNDCKGIAASTEWLEYLGSDGSLEELVV 180
Query: 181 NNCQEISQYDFL 192
NNC ISQYDFL
Sbjct: 181 NNCPGISQYDFL 192
>Os12g0517000 Cyclin-like F-box domain containing protein
Length = 482
Score = 203 bits (517), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 116/194 (59%), Positives = 140/194 (72%), Gaps = 2/194 (1%)
Query: 1 MEHLSXXXXXXXXXXXTRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGL--ATEDFLALC 58
ME L TRTSDL+SLSLVSK+LYTIDAE R+ IR+G GL A E L LC
Sbjct: 1 MEDLPGAALAEIMKRITRTSDLSSLSLVSKRLYTIDAEHRSTIRVGRGLWPAKEALLTLC 60
Query: 59 SRFPNLLKVEIDYSGSTPGNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSY 118
SRF NL KVEI+Y ST G+GN IDNQGL LS+CC LL D+ L+FC I+D+G+ L+
Sbjct: 61 SRFSNLRKVEINYHDSTRGDGNQIDNQGLLTLSTCCPLLTDLILSFCYYIDDSGLAYLTD 120
Query: 119 CKKLISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEEL 178
CKKL+SL+LNS +TSSGLL++ GCK LS L + +C I+G+ EWL+YLG+DGSLEEL
Sbjct: 121 CKKLVSLRLNSAKNITSSGLLVVAIGCKNLSGLHLINCNKISGNPEWLKYLGSDGSLEEL 180
Query: 179 VVNNCQEISQYDFL 192
VV NC ISQYD L
Sbjct: 181 VVKNCGGISQYDLL 194
>Os02g0798900 Conserved hypothetical protein
Length = 207
Score = 200 bits (508), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 108/186 (58%), Positives = 130/186 (69%), Gaps = 3/186 (1%)
Query: 1 MEHLSXXXXXXXXXXXTRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGL--ATEDFLALC 58
M++LS +TSD NSLSLVSKQLYTIDAEQR AI +GCGL ATE +LC
Sbjct: 1 MDNLSEPLLAEIIKRIAKTSDRNSLSLVSKQLYTIDAEQRDAIHVGCGLHPATEALASLC 60
Query: 59 SRFPNLLKVEIDYSGSTPGNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSY 118
SRFPNL KV IDYSG +G +DNQGL VLSS C+ L D+TL FCS I+D+GI L+Y
Sbjct: 61 SRFPNLWKVVIDYSGWISIHGKQLDNQGLLVLSSHCSSLTDLTLNFCSYIDDSGIGYLAY 120
Query: 119 CKKLISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEEL 178
CKKL S +LN P ++S GLL + GCK+L + + DC + GS EWLEYLG GSLEEL
Sbjct: 121 CKKLRSFRLNFAPAISSRGLLSVAVGCKSLCTFHLVDCMKV-GSVEWLEYLGRAGSLEEL 179
Query: 179 VVNNCQ 184
VV +C+
Sbjct: 180 VVKDCK 185
>Os04g0371600 Leucine-rich repeat, cysteine-containing containing protein
Length = 300
Score = 197 bits (502), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 100/148 (67%), Positives = 117/148 (79%)
Query: 45 LGCGLATEDFLALCSRFPNLLKVEIDYSGSTPGNGNHIDNQGLFVLSSCCTLLNDITLTF 104
+G GLA E AL S+FPNL KVEI+YSG PGNG+ IDNQGL VLS LLND+TL+F
Sbjct: 10 VGSGLAIEALPALFSQFPNLHKVEINYSGWAPGNGSQIDNQGLRVLSFSLPLLNDLTLSF 69
Query: 105 CSKINDAGIVCLSYCKKLISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTE 164
CS+IND+G+ CL+ CK L+SLKLNS PE+TS GLL L GCK LSSL +N+CKGI STE
Sbjct: 70 CSEINDSGLACLTNCKMLMSLKLNSTPEITSRGLLSLAVGCKTLSSLHLNNCKGITSSTE 129
Query: 165 WLEYLGTDGSLEELVVNNCQEISQYDFL 192
WLE+LGT+GSLEELVV NC+ I QY FL
Sbjct: 130 WLEHLGTNGSLEELVVKNCKGIGQYHFL 157
>Os12g0526600 Cyclin-like F-box domain containing protein
Length = 203
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/162 (55%), Positives = 122/162 (75%), Gaps = 2/162 (1%)
Query: 33 YTIDAEQRAAIRLGCGL--ATEDFLALCSRFPNLLKVEIDYSGSTPGNGNHIDNQGLFVL 90
Y I+AE R +IR+G L AT+ ++LCSRF NL V+I+YSG T G+GN +DN GL +L
Sbjct: 33 YKIEAEHRHSIRIGHNLPPATDAIISLCSRFHNLFNVDINYSGWTQGHGNQLDNHGLHIL 92
Query: 91 SSCCTLLNDITLTFCSKINDAGIVCLSYCKKLISLKLNSLPEVTSSGLLMLFFGCKALSS 150
SS C L+DITL+FCS I+D G+ L++CKKL++L+LNS +TSSGLL + GCK LS+
Sbjct: 93 SSYCLSLSDITLSFCSYIDDTGLGYLAFCKKLMTLRLNSAKRITSSGLLAVAVGCKNLSA 152
Query: 151 LFINDCKGIAGSTEWLEYLGTDGSLEELVVNNCQEISQYDFL 192
+ + +C I+G+ EWL+YLG+DGSLEELVV NC+ ISQ+ L
Sbjct: 153 IHLINCNKISGTFEWLKYLGSDGSLEELVVKNCERISQFSLL 194
>Os12g0516900 Cyclin-like F-box domain containing protein
Length = 390
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 123/165 (74%), Gaps = 2/165 (1%)
Query: 30 KQLYTIDAEQRAAIRLGC--GLATEDFLALCSRFPNLLKVEIDYSGSTPGNGNHIDNQGL 87
K+LY I+AE R I + C G AT+ ++LCSRF NLLKV+I+YSG T +GN +DN GL
Sbjct: 30 KRLYKIEAESRHTIHISCSLGPATDAIVSLCSRFHNLLKVDINYSGWTQDHGNQLDNHGL 89
Query: 88 FVLSSCCTLLNDITLTFCSKINDAGIVCLSYCKKLISLKLNSLPEVTSSGLLMLFFGCKA 147
+LSS C L+DITL+FCS I+D G+ L++CKKLI+L+LNS ++TSSGLL + GCK
Sbjct: 90 RILSSYCLSLSDITLSFCSYIDDTGLGYLAFCKKLITLRLNSATKITSSGLLAVAVGCKN 149
Query: 148 LSSLFINDCKGIAGSTEWLEYLGTDGSLEELVVNNCQEISQYDFL 192
LS+L + DC I+G+ EWL+YLG+DGSLEEL V NC I+QY L
Sbjct: 150 LSALHLIDCNKISGAFEWLKYLGSDGSLEELKVKNCVGINQYSLL 194
>Os12g0517100 Cyclin-like F-box domain containing protein
Length = 501
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 120/178 (67%), Gaps = 10/178 (5%)
Query: 17 TRTSDLNSLSLVSKQLYTIDAEQRAAIRLGCGL--ATEDFLALCSRFPNLLKVEIDYSGS 74
T TSDL S+SLVSK+LYTI+AEQR++IR+G L A + ALCSRFPNLL+VE+DYSG
Sbjct: 47 TNTSDLKSISLVSKRLYTIEAEQRSSIRVGSDLCPAIDALSALCSRFPNLLEVEMDYSGW 106
Query: 75 TPGNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSYCKKLISLKLNSLPEVT 134
H + + S +L D+TL I+D + CL+ CK L+SL+LNS+ +
Sbjct: 107 K----FHWNLLEKHIFSLHFPVLRDLTLY----IDDIRMGCLASCKNLMSLRLNSVSAIG 158
Query: 135 SSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEELVVNNCQEISQYDFL 192
S GLL + GCK L+SL I C I GS +WLEY+G+ GSLEELVV NC+ ISQYD L
Sbjct: 159 SCGLLSVAVGCKNLTSLHIIKCNHIVGSDKWLEYIGSAGSLEELVVKNCKRISQYDLL 216
>Os04g0370800
Length = 164
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 62/70 (88%)
Query: 123 ISLKLNSLPEVTSSGLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEELVVNN 182
+SL+LNS+PE+TSSGLL+L GCKALSS+++NDCKGIAGSTEWLE+LG +GSLEEL V N
Sbjct: 1 MSLRLNSIPELTSSGLLLLAVGCKALSSVYLNDCKGIAGSTEWLEHLGANGSLEELAVKN 60
Query: 183 CQEISQYDFL 192
C+ I QY FL
Sbjct: 61 CKGIGQYHFL 70
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,834,497
Number of extensions: 223165
Number of successful extensions: 633
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 10
Length of query: 192
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 97
Effective length of database: 12,075,471
Effective search space: 1171320687
Effective search space used: 1171320687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)