Os12g0516900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os12g0516900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.43 | 0.608 | 5.12 | 0.205 | 0.72 | 1.79 | 0.633 | 2.16 | -0.598 | 17.3 | 23.39 | 369 | -- | -- |
| 171.2 | 0.609 | 5.08 | 0.476 | 0.715 | 1.41 | 0.156 | -- | -0.525 | 17.4 | 24.2 | 390 | -- | -- |
| 168.32 | 0.604 | 5.12 | 0.236 | 0.721 | 1.79 | -- | 1.94 | -0.591 | 17.3 | 23.28 | 369 | -- | -- |
| 171.26 | 0.61 | 5.08 | 0.478 | 0.712 | 1.41 | -- | -- | -0.526 | 17.4 | 24.2 | 392 | -- | -- |
| 194.54 | 0.65 | 5.11 | 0.182 | -- | 1.49 | -- | 1.7 | -0.638 | -- | 23.32 | 402 | -- | -- |
| 198.49 | 0.66 | 5.14 | 0.126 | 0.584 | -- | 0.227 | -- | -0.78 | 17.3 | -- | -- | -- | -- |
| 198.61 | 0.66 | 5.14 | 0.125 | 0.585 | -- | -- | -- | -0.779 | 17.3 | -- | -- | -- | -- |
| 195.26 | 0.651 | 5.07 | 0.496 | -- | 1.24 | -- | -- | -0.52 | -- | 25.7 | 1360 | -- | -- |
| 176.71 | 0.619 | 5.1 | -- | 0.67 | 1.25 | -- | -- | -0.603 | 17.4 | 24.11 | 391 | -- | -- |
| 216.49 | 0.688 | 5.13 | 0.105 | -- | -- | -- | -- | -0.793 | -- | -- | -- | -- | -- |
| 199.03 | 0.66 | 5.14 | -- | 0.583 | -- | -- | -- | -0.793 | 17.3 | -- | -- | -- | -- |
| 200.15 | 0.659 | 5.09 | -- | -- | 0.978 | -- | -- | -0.625 | -- | 25.65 | 1108 | -- | -- |
| 216.79 | 0.687 | 5.13 | -- | -- | -- | -- | -- | -0.805 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 16 |
| 4 | 162.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 8 | 162.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 10 |
| 15 | 163.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 16 | 163.24 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 57 | 164.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 4 |
| 71 | 165.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 85 | 165.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 96 | 165.99 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 22 |
| 98 | 166.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 122 | 166.67 | temperature | 25 | 270 | < th | dose dependent | sin | 9 | NA |
| 135 | 167.03 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 12 |
| 179 | 168.12 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 23 |
| 182 | 168.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 15 |
| 206 | 168.43 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 11 |
| 257 | 169.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 10 |
| 372 | 170.65 | temperature | 20 | 720 | > th | dose dependent | sin | 12 | NA |
| 382 | 170.78 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 17 |
| 429 | 171.22 | temperature | 20 | 270 | > th | dose independent | sin | 9 | NA |
| 431 | 171.22 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 22 |
| 448 | 171.40 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 19 |
| 476 | 171.60 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 17 |
| 503 | 171.78 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 513 | 171.85 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 13 |
| 523 | 171.96 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 20 |
| 566 | 172.22 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 570 | 172.25 | temperature | 20 | 270 | < th | dose independent | sin | 9 | NA |
| 582 | 172.29 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 584 | 172.30 | temperature | 25 | 270 | < th | dose dependent | rect. | 18 | 20 |
| 603 | 172.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 608 | 172.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 637 | 172.57 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 639 | 172.57 | temperature | 25 | 10 | < th | dose dependent | sin | 6 | NA |
| 677 | 172.73 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 23 |
| 702 | 172.89 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 773 | 173.31 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 2 |
| 796 | 173.42 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 803 | 173.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 810 | 173.47 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 12 |
| 829 | 173.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 855 | 173.76 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 4 |
| 918 | 174.11 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 23 |
| 920 | 174.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 11 |
| 960 | 174.32 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 10 |
| 965 | 174.35 | temperature | 20 | 30 | > th | dose independent | sin | 6 | NA |
| 971 | 174.38 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 23 |