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Os12g0526600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.59 (0.0235) R2 : 0.652
β1 : 1.36 (0.0861) R2dD : 0.194 R2D : 0.137
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.5 (0.0598) R2dE : 0.491 R2E : 0.442
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.365 (0.0504) R2dN8 : 0.0516 R2N8 : -0.0232
σ : 0.44
deviance : 89.15
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_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.5
memory length : 336
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.632
open length of G : 6.02

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.06 0.436 5.61 1.38 0.268 -1.42 0.0357 0.66 0.336 21.3 0.2246 307 0.882 5.52
86.89 0.434 5.61 1.33 0.286 -1.39 -0.233 -- 0.326 20.9 0.1962 310 0.832 5.54
86.03 0.432 5.61 1.38 0.268 -1.43 -- 0.648 0.335 21.4 0.4935 308 0.847 5.53
87.03 0.435 5.61 1.34 0.267 -1.42 -- -- 0.325 21.4 0.4077 310 0.833 5.53
88.32 0.438 5.6 1.38 -- -1.5 -- 0.632 0.363 -- 0.5 331 0.714 5.95
118.31 0.51 5.65 1.3 1.35 -- -0.445 -- 0.251 18.5 -- -- -- --
118.8 0.51 5.65 1.3 1.35 -- -- -- 0.25 18.5 -- -- -- --
89.15 0.44 5.59 1.36 -- -1.5 -- -- 0.365 -- 0.5 336 0.632 6.02
134.46 0.54 5.64 -- 0.301 -1.32 -- -- 0.202 20.9 0.4768 303 0.983 5.55
213.42 0.683 5.63 1.27 -- -- -- -- 0.222 -- -- -- -- --
163.48 0.598 5.69 -- 1.33 -- -- -- 0.105 18.6 -- -- -- --
136.52 0.544 5.63 -- -- -1.46 -- -- 0.209 -- 0.5 317 0.717 6.42
255.87 0.747 5.66 -- -- -- -- -- 0.0814 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 86.86 precipitation 0.1 270 < th dose independent rect. 1 6
2 86.86 wind 9.0 270 < th dose independent rect. 7 18
3 86.86 precipitation 0.1 270 < th dose dependent rect. 1 6
4 86.93 humidity 50.0 270 > th dose dependent rect. 1 6
5 87.01 radiation 40.0 270 < th dose dependent rect. 1 6
6 87.06 radiation 20.0 270 < th dose independent rect. 1 6
8 87.09 wind 7.0 270 < th dose independent rect. 1 6
11 87.12 temperature 10.0 270 > th dose independent rect. 1 6
13 87.12 temperature 30.0 270 < th dose independent rect. 1 6
14 87.12 humidity 50.0 270 > th dose independent rect. 1 6
16 87.12 atmosphere 995.0 270 > th dose independent rect. 1 6
17 87.12 atmosphere 1015.0 270 < th dose independent rect. 1 6
19 87.12 temperature 10.0 270 > th dose independent rect. 7 18
21 87.22 precipitation 0.1 270 < th dose independent rect. 7 18
22 87.22 precipitation 0.1 270 < th dose dependent rect. 7 18
28 87.80 wind 9.0 270 < th dose dependent rect. 1 6
63 88.57 temperature 10.0 270 > th dose dependent rect. 1 6
73 89.08 wind 9.0 270 < th dose dependent rect. 2 4
100 89.60 temperature 10.0 270 > th dose dependent rect. 1 19
106 89.92 atmosphere 1010.0 270 < th dose independent rect. 11 9
108 89.99 wind 1.0 270 > th dose independent rect. 7 18
115 90.15 atmosphere 1015.0 270 < th dose dependent rect. 1 6
117 90.19 humidity 60.0 270 > th dose dependent rect. 3 2
123 90.31 atmosphere 995.0 270 > th dose independent rect. 7 18
139 90.35 temperature 15.0 270 > th dose independent rect. 11 9
141 90.39 temperature 30.0 270 < th dose independent rect. 20 16
158 90.69 precipitation 0.1 270 < th dose independent rect. 3 2
159 90.69 precipitation 0.1 270 < th dose dependent rect. 3 2
161 90.72 wind 9.0 270 < th dose independent rect. 5 22
174 90.78 humidity 80.0 270 > th dose independent rect. 3 2
184 90.89 wind 7.0 270 < th dose independent rect. 3 2
185 90.89 wind 1.0 270 > th dose independent rect. 12 8
186 90.92 atmosphere 1015.0 270 < th dose dependent rect. 3 2
189 90.93 temperature 10.0 270 > th dose independent rect. 3 2
191 90.93 temperature 30.0 270 < th dose independent rect. 3 2
192 90.93 humidity 50.0 270 > th dose independent rect. 3 2
195 90.93 atmosphere 995.0 270 > th dose independent rect. 3 2
196 90.93 atmosphere 1010.0 270 < th dose independent rect. 3 2
198 90.93 radiation 20.0 270 < th dose independent rect. 3 2
201 90.93 temperature 10.0 270 > th dose independent rect. 5 22
202 90.94 radiation 40.0 270 < th dose dependent rect. 3 2
204 90.96 radiation 1.0 270 < th dose independent rect. 3 2
212 91.00 wind 9.0 270 < th dose independent rect. 20 16
215 91.03 wind 9.0 270 < th dose dependent rect. 3 2
219 91.04 temperature 10.0 270 > th dose independent rect. 20 16
220 91.04 atmosphere 995.0 270 > th dose independent rect. 20 16
225 91.12 atmosphere 1015.0 270 < th dose independent rect. 7 18
235 91.24 atmosphere 995.0 270 > th dose independent rect. 12 8
240 91.30 wind 7.0 270 < th dose independent rect. 18 8
243 91.32 temperature 10.0 270 > th dose independent rect. 6 7
244 91.32 atmosphere 995.0 270 > th dose independent rect. 6 7
245 91.32 atmosphere 1015.0 270 < th dose independent rect. 6 7
246 91.32 temperature 10.0 270 > th dose independent rect. 13 17
254 91.42 humidity 50.0 270 > th dose independent rect. 20 15
256 91.46 wind 9.0 270 < th dose independent rect. 6 7
262 91.49 precipitation 0.1 270 < th dose independent rect. 6 7
263 91.49 precipitation 0.1 270 < th dose dependent rect. 6 7
265 91.52 temperature 15.0 270 > th dose independent rect. 2 16
267 91.53 temperature 15.0 270 > th dose independent rect. 1 19
277 91.60 precipitation 0.1 270 < th dose independent rect. 20 16
278 91.60 precipitation 0.1 270 < th dose dependent rect. 20 16
283 91.63 precipitation 0.1 270 < th dose independent rect. 5 22
284 91.63 precipitation 0.1 270 < th dose dependent rect. 5 22
285 91.64 atmosphere 995.0 270 > th dose independent rect. 13 17
286 91.66 precipitation 0.1 270 < th dose independent rect. 12 8
287 91.66 precipitation 0.1 270 < th dose dependent rect. 12 8
304 91.70 humidity 50.0 270 > th dose independent rect. 7 18
306 91.72 wind 1.0 270 > th dose independent rect. 20 16
307 91.75 temperature 30.0 270 < th dose independent rect. 6 6
316 91.78 wind 9.0 270 < th dose independent rect. 12 8
391 92.04 precipitation 0.1 270 < th dose independent rect. 13 17
392 92.04 precipitation 0.1 270 < th dose dependent rect. 13 17
407 92.13 temperature 30.0 270 < th dose dependent rect. 7 18
409 92.17 humidity 50.0 270 > th dose independent rect. 6 7
413 92.19 wind 1.0 270 > th dose independent rect. 6 6
414 92.19 wind 9.0 270 < th dose independent rect. 13 17
473 92.61 wind 1.0 90 > th dose independent rect. 22 14
500 92.74 radiation 10.0 270 < th dose dependent rect. 18 8
505 92.78 radiation 1.0 270 < th dose independent rect. 18 8
514 92.82 atmosphere 995.0 270 > th dose independent rect. 18 8
515 92.82 precipitation 0.1 270 < th dose independent rect. 2 16
517 92.82 precipitation 0.1 270 < th dose dependent rect. 2 16
522 92.85 temperature 10.0 270 > th dose independent rect. 18 8
523 92.85 humidity 50.0 270 > th dose independent rect. 18 8
527 92.85 precipitation 0.1 270 < th dose independent rect. 18 8
529 92.85 atmosphere 1015.0 270 < th dose independent rect. 2 16
530 92.85 atmosphere 995.0 270 > th dose independent rect. 1 17
531 92.85 precipitation 0.1 270 < th dose dependent rect. 18 8
545 92.91 wind 1.0 30 > th dose independent rect. 12 10
561 92.97 radiation 40.0 270 < th dose independent rect. 13 17
564 92.97 radiation 10.0 270 < th dose dependent rect. 1 12
589 93.08 atmosphere 1010.0 10 < th dose independent rect. 12 10
601 93.15 temperature 30.0 270 < th dose independent rect. 19 6
645 93.24 wind 9.0 270 < th dose dependent rect. 18 7
672 93.30 wind 9.0 270 < th dose dependent rect. 7 18
682 93.34 temperature 10.0 30 > th dose independent rect. 12 10
685 93.34 temperature 10.0 30 > th dose independent rect. 22 14
686 93.34 atmosphere 995.0 30 > th dose independent rect. 22 14
699 93.39 temperature 10.0 1440 > th dose independent rect. 13 10
702 93.39 temperature 10.0 1440 > th dose independent rect. 23 14
705 93.39 atmosphere 995.0 1440 > th dose independent rect. 23 14
723 93.45 atmosphere 995.0 270 > th dose dependent rect. 6 19
736 93.54 radiation 10.0 270 < th dose dependent rect. 1 17
737 93.55 wind 9.0 30 < th dose independent rect. 22 14
749 93.62 wind 9.0 270 < th dose independent rect. 2 16
767 93.73 precipitation 0.1 10 < th dose independent rect. 12 10
769 93.73 precipitation 0.1 10 < th dose dependent rect. 12 10
790 93.86 wind 9.0 30 < th dose independent rect. 12 10
791 93.86 temperature 30.0 270 < th dose independent rect. 7 18
819 93.90 temperature 10.0 90 > th dose dependent rect. 4 17
824 93.93 atmosphere 995.0 30 > th dose independent rect. 12 10
835 93.96 humidity 50.0 270 > th dose dependent rect. 20 5
935 94.37 atmosphere 1010.0 270 < th dose independent rect. 12 18
939 94.39 temperature 10.0 270 > th dose dependent rect. 11 9
960 94.47 radiation 1.0 270 > th dose independent rect. 6 6