Os04g0370300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0370300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.32 | 0.568 | 4.44 | 0.138 | 0.913 | 1.08 | -0.658 | 3.24 | -1.64 | 20.5 | 20.8 | 1407 | -- | -- |
| 166.27 | 0.601 | 4.52 | -0.267 | 0.837 | 0.768 | -0.245 | -- | -1.81 | 20.9 | 24.7 | 1767 | -- | -- |
| 147.65 | 0.566 | 4.44 | 0.159 | 0.92 | 1.08 | -- | 3.23 | -1.64 | 20.4 | 20.82 | 1406 | -- | -- |
| 162.74 | 0.594 | 4.56 | -0.444 | 0.902 | 0.695 | -- | -- | -1.88 | 19.9 | 24.35 | 1163 | -- | -- |
| 190.86 | 0.643 | 4.42 | 0.231 | -- | 1.09 | -- | 3.16 | -1.67 | -- | 21.3 | 2081 | -- | -- |
| 179.61 | 0.628 | 4.5 | -0.227 | 0.924 | -- | -0.574 | -- | -1.6 | 20.6 | -- | -- | -- | -- |
| 180.64 | 0.629 | 4.5 | -0.207 | 0.929 | -- | -- | -- | -1.6 | 20.5 | -- | -- | -- | -- |
| 202.6 | 0.663 | 4.55 | -0.532 | -- | 0.83 | -- | -- | -1.93 | -- | 24.8 | 2064 | -- | -- |
| 164.39 | 0.597 | 4.53 | -- | 0.825 | 0.583 | -- | -- | -1.76 | 20.4 | 22.4 | 661 | -- | -- |
| 228.89 | 0.707 | 4.47 | -0.211 | -- | -- | -- | -- | -1.61 | -- | -- | -- | -- | -- |
| 181.77 | 0.631 | 4.49 | -- | 0.929 | -- | -- | -- | -1.58 | 20.5 | -- | -- | -- | -- |
| 193.31 | 0.648 | 4.54 | -- | -- | 0.834 | -- | -- | -1.89 | -- | 24.7 | 626 | -- | -- |
| 230.07 | 0.708 | 4.47 | -- | -- | -- | -- | -- | -1.59 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 2 | 145.98 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 3 | 146.02 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 9 | 146.49 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 11 | 146.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 13 | 146.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 17 | 146.92 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 23 | 147.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 31 | 147.55 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 39 | 147.65 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 55 | 148.13 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 57 | 148.14 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 62 | 148.18 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 71 | 148.30 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 111 | 148.83 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 121 | 148.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 133 | 148.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 16 |
| 139 | 149.02 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 160 | 149.17 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 14 |
| 162 | 149.18 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 164 | 149.19 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 191 | 149.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 207 | 149.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 236 | 149.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 249 | 149.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 259 | 149.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 265 | 149.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 272 | 149.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 346 | 149.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 399 | 150.18 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 598 | 150.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 627 | 151.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 658 | 151.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 738 | 151.45 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 750 | 151.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 827 | 151.72 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 835 | 151.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 836 | 151.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 837 | 151.75 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 870 | 151.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 911 | 151.99 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 930 | 152.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 932 | 152.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 933 | 152.06 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 21 |
| 954 | 152.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 956 | 152.12 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 960 | 152.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 963 | 152.13 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |