BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0370300 Os04g0370300|AK065364
         (192 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80570.2  | chr1:30290661-30292231 FORWARD LENGTH=481          159   6e-40

>AT1G80570.2 | chr1:30290661-30292231 FORWARD LENGTH=481
          Length = 480

 Score =  159 bits (403), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 114/176 (64%), Gaps = 3/176 (1%)

Query: 19  TSDLNSLSLVSKQLYTIDAEQRAAIRLGCGL--ATEDFLALCSRFPNLLKVEIDYSGSTP 76
           T D NSLSL  K+ +++D EQR ++R+GCGL  A++  L+LC RFPNL KVEI YSG   
Sbjct: 32  TDDRNSLSLSCKRFFSLDNEQRYSLRIGCGLVPASDALLSLCRRFPNLSKVEIIYSGWMS 91

Query: 77  GNGNHIDNQGLFVLSSCCTLLNDITLTFCSKINDAGIVCLSYCKKLISLKLNSLPEVTSS 136
             G  +D+QGL VL++ C  L D+TL+FC+ I D GI  LS C +L SLKLN  P +T  
Sbjct: 92  KLGKQVDDQGLLVLTTNCHSLTDLTLSFCTFITDVGIGHLSSCPELSSLKLNFAPRITGC 151

Query: 137 GLLMLFFGCKALSSLFINDCKGIAGSTEWLEYLGTDGSLEELVVNNCQEISQYDFL 192
           G+L L  GCK L  L +  C  +A S EWLEY G   +LEEL + NC+ I + D +
Sbjct: 152 GVLSLAVGCKKLRRLHLIRCLNVA-SVEWLEYFGKLETLEELCIKNCRAIGEGDLI 206



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,965,071
Number of extensions: 159414
Number of successful extensions: 476
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 6
Length of query: 192
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 99
Effective length of database: 8,556,881
Effective search space: 847131219
Effective search space used: 847131219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)