Os04g0371600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, cysteine-containing containing protein.
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Os04g0371600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, cysteine-containing containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.3 | 0.461 | 4.05 | 2.27 | 0.717 | 0.585 | 1.76 | 2.62 | 0.317 | 17.4 | 20.4 | 30 | -- | -- |
| 100.07 | 0.466 | 4.08 | 1.84 | 0.687 | 0.698 | 2.19 | -- | 0.259 | 16.9 | 25.47 | 59 | -- | -- |
| 102.5 | 0.472 | 4.02 | 2.44 | 0.716 | 0.55 | -- | 3.65 | 0.38 | 17 | 19.3 | 60 | -- | -- |
| 112.17 | 0.493 | 4.09 | 1.83 | 0.593 | 0.87 | -- | -- | 0.23 | 16.9 | 24.3 | 98 | -- | -- |
| 118.61 | 0.507 | 4.04 | 2.2 | -- | 1.09 | -- | 3.38 | 0.288 | -- | 24.2 | 145 | -- | -- |
| 108.71 | 0.489 | 4.08 | 1.97 | 0.937 | -- | 2.46 | -- | 0.306 | 16.6 | -- | -- | -- | -- |
| 124.76 | 0.523 | 4.07 | 1.98 | 0.952 | -- | -- | -- | 0.319 | 16.5 | -- | -- | -- | -- |
| 123.45 | 0.517 | 4.09 | 1.74 | -- | 1.36 | -- | -- | 0.172 | -- | 24.4 | 164 | -- | -- |
| 195.18 | 0.651 | 4.16 | -- | 0.441 | 1.35 | -- | -- | -0.0844 | 17.8 | 22.77 | 76 | -- | -- |
| 173.2 | 0.615 | 4.06 | 1.95 | -- | -- | -- | -- | 0.294 | -- | -- | -- | -- | -- |
| 228.61 | 0.707 | 4.12 | -- | 0.914 | -- | -- | -- | 0.098 | 16.5 | -- | -- | -- | -- |
| 200.76 | 0.66 | 4.15 | -- | -- | 1.62 | -- | -- | -0.0687 | -- | 23.93 | 143 | -- | -- |
| 273.29 | 0.772 | 4.11 | -- | -- | -- | -- | -- | 0.0779 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.02 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 19 |
| 17 | 90.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 77 | 92.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 94 | 92.63 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 112 | 93.11 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 20 |
| 116 | 93.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 153 | 93.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 155 | 93.67 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 197 | 94.22 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 18 |
| 202 | 94.27 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 15 |
| 203 | 94.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 11 |
| 205 | 94.34 | humidity | 70 | 30 | > th | dose independent | rect. | 13 | 19 |
| 237 | 94.73 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 9 |
| 245 | 94.80 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 19 |
| 249 | 94.82 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 254 | 94.86 | radiation | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 289 | 95.11 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 17 |
| 306 | 95.21 | humidity | 70 | 90 | > th | dose independent | rect. | 15 | 16 |
| 353 | 95.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 357 | 95.53 | humidity | 70 | 90 | > th | dose independent | rect. | 17 | 14 |
| 375 | 95.62 | temperature | 30 | 10 | < th | dose dependent | sin | 21 | NA |
| 377 | 95.64 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 19 |
| 389 | 95.71 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 402 | 95.75 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 21 |
| 462 | 96.03 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 476 | 96.10 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 527 | 96.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 531 | 96.33 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 15 |
| 542 | 96.37 | radiation | 10 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 549 | 96.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 551 | 96.40 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 609 | 96.62 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 610 | 96.63 | humidity | 60 | 270 | > th | dose independent | rect. | 11 | 9 |
| 646 | 96.76 | humidity | 70 | 30 | > th | dose independent | rect. | 13 | 10 |
| 665 | 96.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 708 | 96.94 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 12 |
| 719 | 96.96 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 741 | 97.05 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 757 | 97.10 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 22 |
| 779 | 97.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 801 | 97.20 | humidity | 50 | 30 | > th | dose dependent | rect. | 13 | 10 |
| 816 | 97.22 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 830 | 97.25 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 882 | 97.35 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 914 | 97.41 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 923 | 97.42 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 934 | 97.46 | humidity | 70 | 90 | > th | dose independent | rect. | 3 | 20 |
| 936 | 97.46 | humidity | 50 | 90 | > th | dose dependent | rect. | 3 | 20 |
| 939 | 97.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 979 | 97.55 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 20 |
| 995 | 97.59 | humidity | 60 | 270 | > th | dose independent | rect. | 2 | 17 |