BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0346000 Os04g0346000|AK064621
(267 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0346000 Prolyl 4-hydroxylase, alpha subunit domain con... 529 e-150
Os10g0497800 Similar to Prolyl 4-hydroxylase, alpha subunit... 238 4e-63
Os07g0194500 Prolyl 4-hydroxylase, alpha subunit domain con... 206 1e-53
Os03g0803500 Similar to Prolyl 4-hydroxylase alpha-1 subuni... 205 3e-53
Os05g0489100 Similar to Prolyl 4-hydroxylase alpha subunit-... 202 2e-52
Os10g0413500 Prolyl 4-hydroxylase, alpha subunit domain con... 196 2e-50
Os03g0761900 Similar to Prolyl 4-hydroxylase 166 2e-41
Os10g0415128 Prolyl 4-hydroxylase, alpha subunit domain con... 166 2e-41
Os03g0166100 150 7e-37
Os01g0174500 Prolyl 4-hydroxylase, alpha subunit domain con... 126 2e-29
>Os04g0346000 Prolyl 4-hydroxylase, alpha subunit domain containing protein
Length = 267
Score = 529 bits (1362), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/267 (95%), Positives = 255/267 (95%)
Query: 1 MGMXXXXXXXXXXXXTFVTLGMILGSLLQLAFFRRIDDHSNVTHLENDQEAAFLRLGLVK 60
MGM TFVTLGMILGSLLQLAFFRRIDDHSNVTHLENDQEAAFLRLGLVK
Sbjct: 1 MGMARARARRLLPLLTFVTLGMILGSLLQLAFFRRIDDHSNVTHLENDQEAAFLRLGLVK 60
Query: 61 PEVISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVS 120
PEVISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVS
Sbjct: 61 PEVISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVS 120
Query: 121 SEERKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQR 180
SEERKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQR
Sbjct: 121 SEERKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQR 180
Query: 181 VATMLMYLTDGVEGGETHFPQAGDGECSCGGKMVKGLCVKPNKGDAVLFWSMGLDGETDS 240
VATMLMYLTDGVEGGETHFPQAGDGECSCGGKMVKGLCVKPNKGDAVLFWSMGLDGETDS
Sbjct: 181 VATMLMYLTDGVEGGETHFPQAGDGECSCGGKMVKGLCVKPNKGDAVLFWSMGLDGETDS 240
Query: 241 NSIHGGCPVLEGEKWSATKWMRQKEFV 267
NSIHGGCPVLEGEKWSATKWMRQKEFV
Sbjct: 241 NSIHGGCPVLEGEKWSATKWMRQKEFV 267
>Os10g0497800 Similar to Prolyl 4-hydroxylase, alpha subunit-like protein
Length = 321
Score = 238 bits (606), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 120/216 (55%), Positives = 148/216 (68%), Gaps = 18/216 (8%)
Query: 62 EVISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVSS 121
EV+SW PR ++HNFLS EEC+YL S+A+P ++ STVVD +TG S VRTSSGMF+
Sbjct: 111 EVLSWEPRAFLYHNFLSKEECEYLISLAKPHMKKSTVVDASTGGSKDSRVRTSSGMFLGR 170
Query: 122 EERKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQRV 181
+ K +I++IEKRIS Y+ IP ENGE +QVL YE Q Y PH DYF D FN K GGQR+
Sbjct: 171 GQDK--IIRTIEKRISDYTFIPVENGEGLQVLHYEVGQKYEPHFDYFHDEFNTKNGGQRI 228
Query: 182 ATMLMYLTDGVEGGETHFPQAGD-----------GECSCGGKMVKGLCVKPNKGDAVLFW 230
AT+LMYL+D EGGET FP + EC+ KGL VKP GDA+LFW
Sbjct: 229 ATLLMYLSDVEEGGETIFPSSKANSSSSPFYNELSECA-----KKGLAVKPKMGDALLFW 283
Query: 231 SMGLDGETDSNSIHGGCPVLEGEKWSATKWMRQKEF 266
SM DG D+ S+HGGCPV++G KWS+TKWMR E+
Sbjct: 284 SMRPDGSLDATSLHGGCPVIKGNKWSSTKWMRVHEY 319
>Os07g0194500 Prolyl 4-hydroxylase, alpha subunit domain containing protein
Length = 319
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 137/212 (64%), Gaps = 13/212 (6%)
Query: 63 VISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVSSE 122
+SW PR+ V+ FLS +ECD+L + + ++Q S V D +GK V S VRTSSGMF+ +
Sbjct: 59 AVSWRPRVFVYKGFLSDDECDHLVKLGKRKMQRSMVADNKSGKSVMSEVRTSSGMFL--D 116
Query: 123 ERKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQRVA 182
+R+ PV+ IEKRI+ ++ +PEEN E IQ+LRYE Q Y PH DYF D N GG R A
Sbjct: 117 KRQDPVVSRIEKRIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKVNQALGGHRYA 176
Query: 183 TMLMYLTDGVEGGETHFPQA--------GDGECSCGGKMVKGLCVKPNKGDAVLFWSMGL 234
T+LMYL+ +GGET FP A D C KGL VKP KGD VLF+S+ +
Sbjct: 177 TVLMYLSTVEKGGETVFPNAEGWENQPKDDTFSECAQ---KGLAVKPVKGDTVLFFSLHI 233
Query: 235 DGETDSNSIHGGCPVLEGEKWSATKWMRQKEF 266
DG D S+HG CPV+EGEKWSA KW+R + +
Sbjct: 234 DGVPDPLSLHGSCPVIEGEKWSAPKWIRIRSY 265
>Os03g0803500 Similar to Prolyl 4-hydroxylase alpha-1 subunit-like protein
Length = 299
Score = 205 bits (521), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 138/213 (64%), Gaps = 17/213 (7%)
Query: 64 ISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVSSEE 123
+SW PR ++ FLS +ECD+L ++A+ R++ S V D +GK + S VRTSSG F+S E
Sbjct: 40 LSWRPRAFLYSGFLSHDECDHLVNLAKGRMEKSMVADNDSGKSIMSQVRTSSGTFLSKHE 99
Query: 124 RKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQRVAT 183
++ IEKR++ ++ +PEEN E IQ+L YE Q Y H DYF D N+KRGG RVAT
Sbjct: 100 DD--IVSGIEKRVAAWTFLPEENAESIQILHYELGQKYDAHFDYFHDKNNLKRGGHRVAT 157
Query: 184 MLMYLTDGVEGGETHFPQAGD----------GECSCGGKMVKGLCVKPNKGDAVLFWSMG 233
+LMYLTD +GGET FP A +C+ GL VKP KGDA+LF+S+
Sbjct: 158 VLMYLTDVKKGGETVFPNAAGRHLQLKDETWSDCA-----RSGLAVKPKKGDALLFFSLH 212
Query: 234 LDGETDSNSIHGGCPVLEGEKWSATKWMRQKEF 266
++ TD S+HG CPV+EGEKWSATKW+ + F
Sbjct: 213 VNATTDPASLHGSCPVIEGEKWSATKWIHVRSF 245
>Os05g0489100 Similar to Prolyl 4-hydroxylase alpha subunit-like protein
Length = 319
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 139/211 (65%), Gaps = 10/211 (4%)
Query: 64 ISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVSSEE 123
ISW PR+ ++ +FLS +E ++L S+AR L+ S V D +GK S+ RTSSG F+ +
Sbjct: 61 ISWKPRVFLYQHFLSDDEANHLVSLARTELKRSAVADNLSGKSELSDARTSSGTFIRKSQ 120
Query: 124 RKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQRVAT 183
P++ IE++I+ ++ +P+ENGE IQVLRY+ + Y H+DYFSD N RGG R+AT
Sbjct: 121 D--PIVAGIEEKIAAWTFLPKENGEDIQVLRYKHGEKYERHYDYFSDNVNTLRGGHRIAT 178
Query: 184 MLMYLTDGVEGGETHFPQA--------GDGECSCGGKMVKGLCVKPNKGDAVLFWSMGLD 235
+LMYLTD EGGET FP A + + + KG+ VKP KGDA+LF+++ D
Sbjct: 179 VLMYLTDVAEGGETVFPLAEEFTESGTNNEDSTLSECAKKGVAVKPRKGDALLFFNLSPD 238
Query: 236 GETDSNSIHGGCPVLEGEKWSATKWMRQKEF 266
DS S+H GCPV++GEKWSATKW+R F
Sbjct: 239 ASKDSLSLHAGCPVIKGEKWSATKWIRVASF 269
>Os10g0413500 Prolyl 4-hydroxylase, alpha subunit domain containing protein
Length = 308
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 138/211 (65%), Gaps = 13/211 (6%)
Query: 64 ISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVSSEE 123
+SW PR + FL+ EC++L S+A+ +L+ S V D +GK V S VRTSSGMF+ E+
Sbjct: 48 LSWRPRAFLHKGFLTDAECEHLISLAKDKLEKSMVADNESGKSVMSEVRTSSGMFL--EK 105
Query: 124 RKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQRVAT 183
++ V+ IE+RI+ ++ +P +NGE IQ+L Y+ + Y PH+DYF D N GG R+AT
Sbjct: 106 KQDEVVARIEERIAAWTFLPPDNGESIQILHYQNGEKYEPHYDYFHDKNNQALGGHRIAT 165
Query: 184 MLMYLTDGVEGGETHFPQA--------GDGECSCGGKMVKGLCVKPNKGDAVLFWSMGLD 235
+LMYL+D +GGET FP+A D C G VKP KGDA+LF+S+ D
Sbjct: 166 VLMYLSDVGKGGETIFPEAEGKLLQPKDDTWSDCAK---NGYAVKPVKGDALLFFSLHPD 222
Query: 236 GETDSNSIHGGCPVLEGEKWSATKWMRQKEF 266
TDS+S+HG CPV+EG+KWSATKW+ + F
Sbjct: 223 ATTDSDSLHGSCPVIEGQKWSATKWIHVRSF 253
>Os03g0761900 Similar to Prolyl 4-hydroxylase
Length = 310
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 126/211 (59%), Gaps = 5/211 (2%)
Query: 58 LVKPEVISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSN--VRTSS 115
L+ +++SW PR + F F +S++C+ + A+ RL ST+ + G+ +S +RTSS
Sbjct: 97 LIPYQILSWQPRALYFPQFATSQQCENIVKTAKQRLMPSTLA-LRKGETEESTKGIRTSS 155
Query: 116 GMFVSSEERKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIK 175
G F+SS+E + +EK+I+ + IP +GE +LRYE Q Y H+D F
Sbjct: 156 GTFLSSDEDPTGTLAEVEKKIAKATMIPRHHGEPFNILRYEIGQRYASHYDAFDPAQYGP 215
Query: 176 RGGQRVATMLMYLTDGVEGGETHFPQAGDGECSCGGKMVK--GLCVKPNKGDAVLFWSMG 233
+ QRVA+ L+YLTD EGGET FP G K GL VKP KGD +LF+S+
Sbjct: 216 QKSQRVASFLLYLTDVEEGGETMFPYENGENMDIGYDYEKCIGLKVKPRKGDGLLFYSLM 275
Query: 234 LDGETDSNSIHGGCPVLEGEKWSATKWMRQK 264
++G D S+HG CPV++GEKW ATKW+R K
Sbjct: 276 VNGTIDPTSLHGSCPVIKGEKWVATKWIRDK 306
>Os10g0415128 Prolyl 4-hydroxylase, alpha subunit domain containing protein
Length = 241
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 116/177 (65%), Gaps = 13/177 (7%)
Query: 98 VVDVATGKGVKSNVRTSSGMFVSSEERKLPVIQSIEKRISVYSQIPEENGELIQVLRYEP 157
V D +GK V S VRTSSGMF+ E+++ V+ IE+RI+ ++ +P +NGE IQ+L Y+
Sbjct: 2 VADNESGKSVMSEVRTSSGMFL--EKKQDEVVARIEERIAAWTFLPPDNGESIQILHYQN 59
Query: 158 SQYYRPHHDYFSDTFNIKRGGQRVATMLMYLTDGVEGGETHFPQA--------GDGECSC 209
+ Y PH+DYF D N GG R+AT+LMYL+D +GGET FP+A D C
Sbjct: 60 GEKYEPHYDYFHDKNNQALGGHRIATVLMYLSDVGKGGETIFPEAEGKLLQPKDDTWSDC 119
Query: 210 GGKMVKGLCVKPNKGDAVLFWSMGLDGETDSNSIHGGCPVLEGEKWSATKWMRQKEF 266
G VKP KGDA+LF+S+ D TDS+S+HG CPV+EG+KWSATKW+ + F
Sbjct: 120 AK---NGYAVKPVKGDALLFFSLHPDATTDSDSLHGSCPVIEGQKWSATKWIHVRSF 173
>Os03g0166100
Length = 277
Score = 150 bits (380), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 127/215 (59%), Gaps = 30/215 (13%)
Query: 64 ISWSPRIIVFHNFLSSEECDYLRSIARP-RLQISTVVDVATGKGVKSNVRTSSGMFVSSE 122
+SW PR ++ FLS ECD+L S+A+ +++ STVVD +G+ V S VRTSSGMF+ +
Sbjct: 45 VSWRPRAFLYEGFLSDAECDHLISLAKQGKMEKSTVVDGESGESVTSKVRTSSGMFL--D 102
Query: 123 ERKLPVIQSIEKRISVYSQIP-----------------EENGELIQVLRYEPSQYYRPHH 165
+++ V+ IE+RI+ ++ +P ENGE +Q+LRY + Y PH
Sbjct: 103 KKQDEVVARIEERIAAWTMLPTECIIFYCFANFAILKLSENGESMQILRYGQGEKYEPHF 162
Query: 166 DYFSDTFNIKRGGQRVATMLMYLTDGVEGGETHFPQA------GDGECSCGGKMVKGLCV 219
DY S R G RVAT+LMYL++ V+ G++ PQA + C +G V
Sbjct: 163 DYISGRQGSTREGDRVATVLMYLSN-VKMGDSLLPQARLSQPKDETWSDCAE---QGFAV 218
Query: 220 KPNKGDAVLFWSMGLDGETDSNSIHGGCPVLEGEK 254
KP KG AVLF+S+ + D++S+HG CPV+EGEK
Sbjct: 219 KPAKGSAVLFFSLHPNATLDTDSLHGSCPVIEGEK 253
>Os01g0174500 Prolyl 4-hydroxylase, alpha subunit domain containing protein
Length = 303
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 115/210 (54%), Gaps = 21/210 (10%)
Query: 60 KPEVISWSPRIIVFHNFLSSEECDYLRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFV 119
K + +SW PRI ++ FLS ECD+L S+ R ++ S +N+
Sbjct: 59 KSKRLSWHPRIFLYEGFLSDMECDHLVSMGRGNMESSLAFTDGDRNSSYNNIEDI----- 113
Query: 120 SSEERKLPVIQSIEKRISVYSQIPEENGELIQVLRYEPSQYYRPHHDYFSDTFNIKRGGQ 179
V+ IE RIS++S +P+ENGE IQVL+Y ++ + S + G
Sbjct: 114 --------VVSKIEDRISLWSFLPKENGESIQVLKYGVNRSGSIKEEPKSSS-----GAH 160
Query: 180 RVATMLMYLTDGVEGGETHFPQA--GDGECSCGG-KMVKGLCVKPNKGDAVLFWSMGLDG 236
R+AT+LMYL+D +GGET FP++ D + G G V+P KG+A+L +++ DG
Sbjct: 161 RLATILMYLSDVKQGGETVFPRSEMKDAQAKEGAPSQCSGYAVRPAKGNAILLFNLRPDG 220
Query: 237 ETDSNSIHGGCPVLEGEKWSATKWMRQKEF 266
ETD +S + CPVLEGEKW A K + ++F
Sbjct: 221 ETDKDSQYEECPVLEGEKWLAIKHINLRKF 250
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,372,473
Number of extensions: 417586
Number of successful extensions: 910
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 11
Length of query: 267
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 168
Effective length of database: 11,866,615
Effective search space: 1993591320
Effective search space used: 1993591320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)