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Os03g0803500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Prolyl 4-hydroxylase alpha-1 subunit-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.52 (0.0573) R2 : 0.506
β1 : 0.279 (0.224) R2dD : 0.00208 R2D : -0.000989
β2 : 1.34 (0.293) R2dC : 0.106 R2C : -0.44
β3 : 3.32 (0.246) R2dE : 0.919 R2E : 0.368
β4 : 4.77 (1.46) R2dD*C : 0.0891 R2D*C : -0.0419
β5 : 3.71 (1.21) R2dD*E : 0.0781 R2D*E : -0.0975
γ1 : 0.303 (0.121) R2dN8 : 0.00904 R2N8 : 0.0151
σ : 1.06
deviance : 511.7
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_____
C
peak time of C : 13.5
E
wheather : temperature
threshold : 30.02
memory length : 703
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17
open length of G : 3.03

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
511.7 1.06 6.52 0.279 1.34 3.32 4.77 3.71 0.303 13.5 30.02 703 17 3.03
533.98 1.08 6.55 0.544 1.56 3.49 2.07 -- 0.15 13.9 30 714 17 3
539.36 1.08 6.45 0.642 1.02 3.26 -- 0.449 0.439 11.7 29.8 677 17.1 2.89
522.16 1.06 6.48 0.552 1.59 3.53 -- -- 0.347 13.2 30.09 700 17 2.96
602.03 1.14 6.51 0.96 -- 3.09 -- -0.231 0.445 -- 29.46 683 17.1 2.68
693.58 1.23 6.51 0.237 2.25 -- -0.717 -- 0.479 23.8 -- -- -- --
695.77 1.24 6.51 0.266 2.25 -- -- -- 0.483 23.8 -- -- -- --
554.55 1.1 6.33 0.574 -- 2.45 -- -- 0.673 -- 29.6 689 17.2 2.43
530.25 1.07 6.48 -- 1.52 3.46 -- -- 0.303 13.2 30.1 698 17 2.97
1015.11 1.49 6.46 0.332 -- -- -- -- 0.511 -- -- -- -- --
697.64 1.24 6.51 -- 2.26 -- -- -- 0.453 23.8 -- -- -- --
555.39 1.1 6.32 -- -- 2.29 -- -- 0.542 -- 29.5 670 17.8 1.75
1018.02 1.49 6.46 -- -- -- -- -- 0.475 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 516.89 temperature 30.0 720 < th dose independent rect. 17 3
2 518.38 humidity 60.0 720 > th dose independent rect. 17 3
4 529.96 precipitation 0.1 90 < th dose independent rect. 20 23
5 529.96 precipitation 0.1 90 < th dose dependent rect. 20 23
6 530.61 humidity 50.0 720 > th dose dependent rect. 17 3
8 534.07 temperature 20.0 90 > th dose independent rect. 18 20
9 534.20 temperature 30.0 90 < th dose independent rect. 18 3
10 534.40 temperature 15.0 90 > th dose independent rect. 20 23
16 538.27 humidity 50.0 90 > th dose dependent rect. 19 1
18 540.96 humidity 50.0 90 > th dose dependent rect. 18 3
23 544.23 temperature 10.0 90 > th dose independent rect. 19 1
26 544.23 humidity 50.0 90 > th dose independent rect. 19 1
28 544.23 atmosphere 995.0 90 > th dose independent rect. 19 1
29 544.23 atmosphere 1010.0 90 < th dose independent rect. 19 1
31 544.23 radiation 1.0 90 < th dose independent rect. 19 1
37 544.23 radiation 1.0 90 < th dose dependent rect. 19 1
42 544.32 wind 9.0 90 < th dose independent rect. 19 1
44 544.39 wind 1.0 90 > th dose independent rect. 19 1
45 544.51 humidity 60.0 720 > th dose independent rect. 16 13
49 545.26 wind 9.0 90 < th dose independent rect. 20 23
56 546.96 temperature 15.0 1440 > th dose independent rect. 20 1
66 549.06 radiation 10.0 720 < th dose independent rect. 16 4
69 549.90 humidity 60.0 720 > th dose independent rect. 17 10
73 550.25 radiation 10.0 720 < th dose dependent rect. 16 4
75 550.29 wind 9.0 90 < th dose dependent rect. 19 1
78 550.98 radiation 1.0 90 < th dose dependent rect. 18 3
80 551.22 temperature 30.0 720 < th dose independent rect. 17 11
96 552.92 atmosphere 995.0 90 > th dose dependent rect. 19 1
100 553.65 radiation 10.0 720 < th dose dependent rect. 17 10
108 554.38 humidity 70.0 10 > th dose independent rect. 19 1
110 554.72 radiation 1.0 90 < th dose independent rect. 18 3
124 556.51 temperature 30.0 1440 < th dose independent rect. 20 1
128 556.51 humidity 50.0 1440 > th dose independent rect. 20 1
134 556.51 atmosphere 995.0 1440 > th dose independent rect. 20 1
138 556.51 radiation 1.0 1440 < th dose independent rect. 20 1
158 556.51 temperature 10.0 1440 > th dose independent rect. 21 23
161 556.51 radiation 1.0 1440 < th dose dependent rect. 20 1
170 556.81 humidity 50.0 14400 > th dose independent rect. 19 3
194 559.21 temperature 30.0 90 < th dose dependent rect. 18 3
204 560.47 radiation 1.0 90 < th dose dependent sin 19 NA
209 560.70 precipitation 0.1 90 < th dose independent rect. 19 1
210 560.70 precipitation 0.1 90 < th dose dependent rect. 19 1
221 561.51 radiation 10.0 720 < th dose independent rect. 16 11
224 561.90 temperature 20.0 90 > th dose independent rect. 18 10
244 561.98 radiation 1.0 90 < th dose dependent rect. 14 7
248 562.11 temperature 10.0 90 > th dose dependent rect. 19 1
328 562.98 radiation 1.0 90 < th dose dependent rect. 11 10
335 563.17 temperature 30.0 10 < th dose dependent rect. 18 3
362 565.06 humidity 50.0 14400 > th dose independent rect. 19 5
438 569.00 wind 1.0 90 > th dose dependent rect. 19 1
439 569.03 temperature 10.0 30 > th dose dependent rect. 21 22
524 570.63 atmosphere 1015.0 90 < th dose dependent rect. 19 1
550 572.20 radiation 1.0 90 < th dose independent sin 18 NA
631 575.15 humidity 60.0 90 > th dose independent rect. 18 5
695 575.67 temperature 15.0 270 > th dose independent rect. 7 13
709 576.25 atmosphere 995.0 30 > th dose independent rect. 21 22
742 578.41 temperature 15.0 1440 > th dose independent rect. 19 5
800 579.71 humidity 60.0 720 > th dose independent rect. 16 19
860 581.50 radiation 1.0 90 > th dose independent sin 16 NA
888 582.26 atmosphere 1015.0 30 < th dose independent rect. 21 22
903 583.11 temperature 30.0 1440 < th dose independent rect. 19 5
907 583.11 humidity 50.0 1440 > th dose independent rect. 19 5
909 583.11 atmosphere 995.0 1440 > th dose independent rect. 19 5
910 583.11 radiation 1.0 1440 < th dose independent rect. 19 5
930 583.11 temperature 10.0 1440 > th dose independent rect. 24 19
934 583.13 radiation 40.0 1440 < th dose dependent rect. 19 5
977 583.92 wind 7.0 270 < th dose independent rect. 20 11
990 584.25 radiation 30.0 43200 < th dose independent rect. 17 2
993 584.31 humidity 50.0 720 > th dose independent rect. 8 12