Os03g0761900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Prolyl 4-hydroxylase.
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Os03g0761900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Prolyl 4-hydroxylase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 271.44 | 0.774 | 4.1 | -1.2 | 0.5 | 2.16 | -0.583 | 0.0735 | -0.177 | 0.969 | 11.95 | 3304 | -- | -- |
| 271.44 | 0.767 | 4.1 | -1.22 | 0.498 | 2.17 | -0.578 | -- | -0.182 | 0.992 | 11.1 | 3314 | -- | -- |
| 272.85 | 0.769 | 4.1 | -1.18 | 0.494 | 2.17 | -- | 0.0494 | -0.174 | 1.06 | 10.82 | 3319 | -- | -- |
| 272.85 | 0.769 | 4.1 | -1.2 | 0.497 | 2.16 | -- | -- | -0.177 | 1.06 | 11.1 | 3320 | -- | -- |
| 281.98 | 0.782 | 4.12 | -1.28 | -- | 2.05 | -- | -0.667 | -0.237 | -- | 16.54 | 2536 | -- | -- |
| 354.98 | 0.883 | 4.01 | -0.323 | 0.598 | -- | -0.558 | -- | 0.242 | 0.829 | -- | -- | -- | -- |
| 356.29 | 0.884 | 4.01 | -0.302 | 0.599 | -- | -- | -- | 0.245 | 0.852 | -- | -- | -- | -- |
| 282.19 | 0.782 | 4.1 | -1.11 | -- | 2.16 | -- | -- | -0.185 | -- | 14.05 | 2538 | -- | -- |
| 298.3 | 0.804 | 4.05 | -- | 0.406 | 1.31 | -- | -- | 0.0549 | 0.781 | 20.69 | 2652 | -- | -- |
| 378.69 | 0.909 | 4 | -0.28 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 358.7 | 0.886 | 4 | -- | 0.594 | -- | -- | -- | 0.278 | 0.829 | -- | -- | -- | -- |
| 307.99 | 0.817 | 4.05 | -- | -- | 1.44 | -- | -- | 0.0201 | -- | 20.6 | 2547 | -- | -- |
| 380.77 | 0.911 | 3.99 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 266.09 | radiation | 10 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 2 | 266.92 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 3 | 267.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 4 | 267.39 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 11 | 268.13 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 13 |
| 13 | 268.18 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 18 | 268.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 43 | 269.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 49 | 269.29 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 52 | 269.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 56 | 269.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 57 | 269.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 70 | 269.76 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 75 | 269.87 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 78 | 269.92 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 9 |
| 88 | 269.99 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 10 |
| 119 | 270.25 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 131 | 270.31 | radiation | 20 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 138 | 270.34 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 13 |
| 143 | 270.36 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 198 | 270.71 | temperature | 10 | 4320 | > th | dose dependent | sin | 10 | NA |
| 220 | 270.81 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 221 | 270.81 | temperature | 30 | 4320 | < th | dose dependent | sin | 10 | NA |
| 227 | 270.83 | radiation | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 288 | 271.06 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 347 | 271.31 | temperature | 15 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 370 | 271.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 407 | 271.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 410 | 271.49 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 466 | 271.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 478 | 271.71 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 502 | 271.76 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 508 | 271.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 528 | 271.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 532 | 271.80 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 557 | 271.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 565 | 271.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 567 | 271.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 20 |
| 579 | 271.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 19 |
| 588 | 271.90 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 597 | 271.90 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 598 | 271.90 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 600 | 271.91 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 684 | 271.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 685 | 271.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 14 |
| 689 | 271.99 | radiation | 1 | 14400 | < th | dose dependent | sin | 10 | NA |
| 699 | 272.01 | radiation | 1 | 14400 | < th | dose independent | rect. | 2 | 10 |
| 702 | 272.01 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 724 | 272.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 731 | 272.04 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 14 |
| 795 | 272.09 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 803 | 272.10 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 960 | 272.22 | radiation | 40 | 4320 | < th | dose dependent | rect. | 16 | 15 |