Os10g0497800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Prolyl 4-hydroxylase, alpha subunit-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0497800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Prolyl 4-hydroxylase, alpha subunit-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.72 | 0.273 | 10.6 | -1.17 | 0.15 | 0.543 | -0.595 | -1.23 | -0.218 | 15.8 | 20.3 | 3818 | -- | -- |
| 34.78 | 0.275 | 10.6 | -0.989 | 0.136 | 0.916 | -0.509 | -- | -0.154 | 15.7 | 19 | 3538 | -- | -- |
| 34.49 | 0.274 | 10.6 | -1.22 | 0.172 | 0.518 | -- | -1.34 | -0.234 | 16.6 | 20.6 | 3821 | -- | -- |
| 35.35 | 0.277 | 10.5 | -1 | 0.146 | 0.895 | -- | -- | -0.147 | 17.2 | 19.1 | 3468 | -- | -- |
| 35.7 | 0.278 | 10.6 | -1.19 | -- | 0.527 | -- | -1.23 | -0.221 | -- | 20.4 | 3404 | -- | -- |
| 46.45 | 0.32 | 10.5 | -0.521 | 0.137 | -- | -0.451 | -- | 0.0389 | 16.3 | -- | -- | -- | -- |
| 46.77 | 0.32 | 10.5 | -0.526 | 0.153 | -- | -- | -- | 0.0364 | 17.9 | -- | -- | -- | -- |
| 36.53 | 0.281 | 10.6 | -1 | -- | 0.903 | -- | -- | -0.158 | -- | 19 | 3468 | -- | -- |
| 50.53 | 0.331 | 10.5 | -- | 0.167 | 0.311 | -- | -- | 0.0137 | 16.4 | 22.39 | 2253 | -- | -- |
| 47.98 | 0.324 | 10.5 | -0.53 | -- | -- | -- | -- | 0.0329 | -- | -- | -- | -- | -- |
| 54.06 | 0.344 | 10.5 | -- | 0.161 | -- | -- | -- | 0.095 | 17.8 | -- | -- | -- | -- |
| 51.78 | 0.335 | 10.5 | -- | -- | 0.29 | -- | -- | 0.0141 | -- | 22.3 | 2007 | -- | -- |
| 55.4 | 0.347 | 10.5 | -- | -- | -- | -- | -- | 0.0917 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 2 | 31.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 4 | 31.67 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 16 | 32.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 19 | 32.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 35 | 32.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 74 | 32.48 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 104 | 32.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 133 | 32.76 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 143 | 32.80 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 217 | 33.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 222 | 33.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 256 | 33.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 258 | 33.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 272 | 33.25 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 282 | 33.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 311 | 33.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 361 | 33.45 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 417 | 33.53 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 429 | 33.56 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 436 | 33.57 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 466 | 33.60 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 500 | 33.66 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 625 | 33.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 677 | 33.90 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 764 | 33.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 13 |
| 962 | 34.11 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |